Gene detail information of Glyur000221s00012492.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G80740.10chromomethylase 1
NRXP_006573534.10PREDICTED: putative DNA (cytosine-5)-methyltransferase CMT1-like [Glycine max]
COGYP_510831.18.00E-37DNA-cytosine methyltransferase [Jannaschia sp. CCS1]
Swissprottr|Q9AXT8|CMT1_MAIZE0DNA (cytosine-5)-methyltransferase 1
trEMBLtr|I1J8E3|I1J8E3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G36500.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002211777036962+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00558DNMT1, dcm EC:2.1.1.37 Cysteine and methionine metabolism map00270
MicroRNAs in cancermap05206


Gene Ontology

molecular_function

GO:0003682  chromatin binding

GO:0008168  methyltransferase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000221s00012492.1PF01426.13BAH911972.00E-12
Glyur000221s00012492.1PF00385.19Chromo3644115.00E-10
Glyur000221s00012492.1PF00145.12DNA_methylase4097676.10E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.150
SRR1783600control5.217
SRR1783602moderate drought stress2.754
SRR1811619moderate drought stress2.801

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.180
DRR006520Root Summer glycyrrhizin high producing strain6.539
DRR006521Root Winter glycyrrhizin high producing strain0.219
DRR006522Root Winter glycyrrhizin high producing strain0.205
DRR006523Root Summer glycyrrhizin low producing strain1.934
DRR006524Root Summer glycyrrhizin low producing strain1.990
DRR006525Leaf Summer glycyrrhizin high producing strain1.215
DRR006526Leaf Summer glycyrrhizin high producing strain1.109

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.565
SRR2868004Drought Stress(Tissue:root)8.524
SRR2967015Control (Tissue:root)10.069

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.053
SRR9715740Leave0.314
SRR9715741Leave1.020
SRR9715739Root3.207
SRR9715742Root3.353
SRR9715743Root2.727

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.937
SRR8749028MeJA induced 9h23.287
SRR8749029MeJA induced 9h24.397
SRR8749030Uninduced3.148
SRR8749031Uninduced3.460
SRR8749032Uninduced2.774

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.385
SRR8400027Control-Root10.975

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved