Gene detail information of Glyur000221s00012507.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65770.1 | 1.00E-29 | ascorbic acid mannose pathway regulator 1 |
| NR | AET04195.2 | 1.07E-89 | F-box protein [Medicago truncatula] |
| Swissprot | tr|Q1PEZ8|FB117_ARATH | 1.00E-39 | F-box protein At2g26160 |
| trEMBL | tr|G7LIM0|G7LIM0_MEDTR | 4.00E-90 | F-box protein {ECO:0000313|EMBL:AET04195.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00221 | 89349 | 90856 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000221s00012507.1 | PF00646.28 | F-box | 8 | 43 | 0.0005 |
| Glyur000221s00012507.1 | PF03478.13 | DUF295 | 303 | 340 | 8.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.843 |
| SRR1783600 | control | 0.827 |
| SRR1783602 | moderate drought stress | 0.934 |
| SRR1811619 | moderate drought stress | 0.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.108 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.800 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.898 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.976 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.057 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.261 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.278 |
| SRR2967015 | Control (Tissue:root) | 1.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.555 |
| SRR9715740 | Leave | 18.749 |
| SRR9715741 | Leave | 16.502 |
| SRR9715739 | Root | 6.693 |
| SRR9715742 | Root | 11.004 |
| SRR9715743 | Root | 8.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.817 |
| SRR8749028 | MeJA induced 9h | 0.666 |
| SRR8749029 | MeJA induced 9h | 0.418 |
| SRR8749030 | Uninduced | 0.487 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.065 |
| SRR8400027 | Control-Root | 1.293 |