Gene detail

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Gene detail information of Glyur000221s00012508.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29180.2	0	root hair specific 16
NR	XP_004502557.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g29180-like isoform X1 [Cicer arietinum]
COG	YP_003372407.1	5.00E-25	serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Swissprot	tr\|C0LGR6\|Y4291_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g29180 (Precursor)
trEMBL	tr\|K7K137\|K7K137_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G00790.2}

Sequence

Transcript Sequence

>Glyur000221s00012508.1
GATCCATGTATTATATTACGGTGGCTGGTTTTGTCAAAACCAGCAAACGCGTGTCCTACTTGACAGTTGACTCNCTGTTTTGCTTATACTAGGTGGTCTCTGCCAATGAAGTATGAAGATGTCTCCACCAACATGTACAGCCAATTTGTAACATTATAGAATAGAATTTGATAAGGGTTTCTATCTTCTTGGTCCAGAGATGGCAAATTTGATCGGATTCATCTTGTTGTTGATGCTTTGTNTTGGTGCTACAGTTTTAGTTCATGCACAGCAACAAACAGGCTTCATAAGCATTGATTGTGGTGGTCCAGAGAATTTTGAGTACACAGATGATACTAAAATTAAGTACAACACAGATGGAGCCTACATACAAACTGGGGTTAACAAGAACATTTCCTCTGAGTATGCATACCCAAACAATCCCATTCTGCCACTACCACTCTCAGATCTCAGAAGTTTTCCTCAGGGAGAGAGGAACTGTTACCGCTTAATAGCCGGAAGAAGAGGCAGTTTACATTTAATAAGGGCTTCCTTCTTGTATGGAAACTACGATGGACAAAACAACCTACCGGAATTTGATCTCTATGTTGGTGTCAATTTCTGGTCATCAGTGAAGTTTAGAAACGCTTCTGAGGAGGTTACAATGGAAATAATCAGCATGGCACAGTCAAAGGTGACAAGTGTTTGTCTTGTGAACAAGGGAACTGGNACTCCTTTTATCTCAGCATTGGAACTTAGACCACTTAATAATTCTATTTATAGTACTGAGTTTGGGGAATCTGCTTCACTGTTACTTTTCAAACGATGGGACATTGGATCACTCAATGGAAGTGGTAGATATGAAGATGATGTTTATGATAGAATTTGGTCTCCCTACAGTTCCTCTTCTTGGGAATCTATCAACACTTCCTCAGTAGTAAATGTCAATGGAGATGGCTATAGAGCACCATCTGAAGTCATCAGGACTGCTGCTAGACCAAGGAATGGCAGTGACACTTTGGAATTTTCATGGACCCCAGATGATCCAAATGAGAGATTTTATGTCTACTTGTACTTTGCTGAAGTGGAACACCTTCAGAAAACCCAATTGAGGAAATGCAATGTATCTTGGAATGGATCTCCAATGATTGAATCTTTAGTACCACGCCACTTNCATGCGACCACTCTTTCTAATTCAAAATCCTTGGTGGCAAATGAACACCAGATGTCTATACACAAAACAAAAGATTCAACACTTCCACCAATTCTCAATGCANTTGANATTTATGTAGTAAGACAGCTGGATGCATTTCCAACACTTGAACAAGATGTTGATGCTATGATGGACATAAAAGAAAGTTATAGAGTTCAGAGAAATTGGGTGNGTGATCCATGTGAACCAAAGAACTACACTTGGGAGGGCTTAAAATGCAACTACAGCNCTTCACTTCCTCCTAGAATCATATCACTGAATCTGAGCTCAAGCAGTTTAAGTGGGATAATAACTTCTGCCTTTTCCAATCTGTCTTCCTTGGAATCTTTGGATTTGTATAACAATAGCTTAGTTGGAGCAATGCCTCAATCTTTGGAAGAATTGAAATCCCTTAAATATTTGAATTTAAAGGGCAATCAACTTTCAGGTTATGTNTCTCCCACTCTTTTAAAAAGATCAAGAGCTGGACTACTTACACTGAGGGTGGATGATAAAAATCTAAGTGACACAGATACGAGTAACAAAAAGAANGTTGTTGTTCCCATTGTTGCATCAGTATCATCAGTTTTAGTTTTATTGGTCATTGCCACGATCATTTGTAAGATTAGAAGAAATGAACAACCAGAGGAGATGAATAAGGTCAACATAGGAGTAAGAACTGTAGCATCAAAGAAGTGGCAATACACATATGCTGAGGTGTTGGANATCACCAGCAACTTTGAAATGGTCATAGGGAGGGGAGGATTTGGAANTGTGTATTGTGGTCAGATAAAAGATGACAATAAAGTTGCAGTCAAGATGCTTTCTCCATCATCAGCTCAGGGACCAAAGGAATTTCAAACTGAGGCTGAGCTCTTGATGACAGTTCATCACAAAAATTTGGTATCCTTCATTGGTTACTGTGATGAAGATGACAAGATGGCACTCATATATGAATACATGGCCAATGGCAACCTGAAAGATTATCTCTCTGATAAAAATATACATTGCTTGAGTTGGGAAAGGAGACTTCANATAGCAATCGATGCTGCAGAGGGATTGGATTACCTACACCATGGATGCAAGCCACCTATAATACACAGGGATGTGAAGTCAGCCAACATTCTTCTGAGTGAAGACTTAGAAGCTAAGATAGCAGATTTTGGCCTCTCTAAGGTGTTTAGGAATGATAGCCGAAATACAGTGACTCGCGATGATGATGATGACAGAAATGCAAAATCTGCAGTCATGGGGACAACAGGGTACCTTGACCCAGAGTACTACAAATTGCGGAACTTGAATGAGAAAAGTGACATCTATAGCTTTGGCGTGGTTCTATTGGAATTGATCACAGGTCTCCCTGCAATATTGAAAGGCAAGCCATCAATACACATACTTGAGTGGATAAGGCCTGAGCTTGAAAGAGGGGACTTGAGTAGAATTTTAGATCCAAGACTCCAAGGCAAATTTGATGCAAGTTCTGGATGGAAAGCTTTAGGAATAGCACTTGCATGCACCGCATCAACCTCCATTCAGAGACCTACAATGAGTGTTGTGTTAGCAGAGCTGAAACAATGCATTAAAATGGAGTCCCCTAGTGGTAGTGAAATATCTCTGGCCCCAAGACAGATCTGTAGCGAGTTTTGCAGTTCATCTGAAGTATTTTCCATGGATAGTGATTCTATCACCTATCCTTACCCAAGGTAAGGCATATACTTAGCCAATGGGGAGTATTCAATTAAATTGTAATTAAATTTTTATGAAACCATAAGATAAAAGACAATTGCTTCCAACAAATATCACTCCTTTTGTCTTATTTGATGATAAAATAACAAATTCCTTCTCTCTTATTCATCTTGTCTACACATAGTGAATTATTNCCTTCTTATATAAAAGACATTTAATTGCAAATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00221	93134	98276	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000221s00012508.1	PF12819.2	Malectin_like	32	357	4.10E-97
Glyur000221s00012508.1	PF13855.1	LRR_8	413	472	1.80E-12
Glyur000221s00012508.1	PF07714.12	Pkinase_Tyr	571	783	1.40E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.768
SRR1783600	control	14.823
SRR1783602	moderate drought stress	8.147
SRR1811619	moderate drought stress	8.197

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.288
DRR006520	Root Summer glycyrrhizin high producing strain	10.284
DRR006521	Root Winter glycyrrhizin high producing strain	12.760
DRR006522	Root Winter glycyrrhizin high producing strain	12.232
DRR006523	Root Summer glycyrrhizin low producing strain	18.822
DRR006524	Root Summer glycyrrhizin low producing strain	18.843
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.088
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.089

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	12.791
SRR2868004	Drought Stress(Tissue:root)	20.640
SRR2967015	Control (Tissue:root)	16.976

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.636
SRR9715740	Leave	0.431
SRR9715741	Leave	2.943
SRR9715739	Root	2.500
SRR9715742	Root	11.819
SRR9715743	Root	10.852

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.401
SRR8749028	MeJA induced 9h	53.755
SRR8749029	MeJA induced 9h	38.861
SRR8749030	Uninduced	51.642
SRR8749031	Uninduced	49.898
SRR8749032	Uninduced	29.165

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	18.718
SRR8400027	Control-Root	18.924