Gene detail information of Glyur000221s00012525.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35800.10RNA polymerase II large subunit
NRXP_004512182.10PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer arietinum]
COGNP_579292.10DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus DSM 3638]
Swissprottr|P18616|NRPB1_ARATH0DNA-directed RNA polymerase II subunit 1
trEMBLtr|K7LNL8|K7LNL8_SOYBN0DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00221187860195654-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03006RPB1, POLR2A EC:2.7.7.6 Purine metabolism map00230
Pyrimidine metabolismmap00240
RNA polymerasemap03020
Huntington's diseasemap05016
Herpes simplex infectionmap05168
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated

GO:0006366  transcription from RNA polymerase II promoter


cellular_component

GO:0005665  DNA-directed RNA polymerase II, core complex


molecular_function

GO:0003677  DNA binding

GO:0003899  DNA-directed RNA polymerase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000221s00012525.1PF04997.7RNA_pol_Rpb1_1143402.60E-105
Glyur000221s00012525.1PF00623.15RNA_pol_Rpb1_23423895.90E-15
Glyur000221s00012525.1PF00623.15RNA_pol_Rpb1_23934711.30E-37
Glyur000221s00012525.1PF04983.13RNA_pol_Rpb1_34756384.40E-47
Glyur000221s00012525.1PF05000.12RNA_pol_Rpb1_46667695.50E-39
Glyur000221s00012525.1PF04998.12RNA_pol_Rpb1_577613661.00E-105
Glyur000221s00012525.1PF04992.9RNA_pol_Rpb1_684210261.90E-67
Glyur000221s00012525.1PF04990.7RNA_pol_Rpb1_7111112458.90E-52
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R148715017.4
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R150215150.17
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R151615290.029
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R153015430.56
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R154415570.033
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R155815710.3
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R157215850.35
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R158615990.19
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R160016130.023
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R161416270.35
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R162816410.37
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R164216550.19
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R165616690.054
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R167016830.37
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R171017230.11
Glyur000221s00012525.1PF05001.8RNA_pol_Rpb1_R172417375


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.216
SRR1783600control28.213
SRR1783602moderate drought stress41.101
SRR1811619moderate drought stress40.910

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.277
DRR006520Root Summer glycyrrhizin high producing strain23.738
DRR006521Root Winter glycyrrhizin high producing strain20.951
DRR006522Root Winter glycyrrhizin high producing strain20.562
DRR006523Root Summer glycyrrhizin low producing strain20.230
DRR006524Root Summer glycyrrhizin low producing strain20.302
DRR006525Leaf Summer glycyrrhizin high producing strain15.859
DRR006526Leaf Summer glycyrrhizin high producing strain15.930

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.358
SRR2868004Drought Stress(Tissue:root)30.207
SRR2967015Control (Tissue:root)33.297

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.404
SRR9715740Leave13.079
SRR9715741Leave21.478
SRR9715739Root4.435
SRR9715742Root32.390
SRR9715743Root29.320

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.942
SRR8749028MeJA induced 9h21.280
SRR8749029MeJA induced 9h18.059
SRR8749030Uninduced9.061
SRR8749031Uninduced7.539
SRR8749032Uninduced9.019

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.587
SRR8400027Control-Root21.609

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved