Gene detail information of Glyur000221s00012529.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35830.10aconitase 1
NRXP_003612247.10Aconitate hydratase [Medicago truncatula]
COGYP_005443915.10aconitate hydratase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprottr|Q42560|ACO1_ARATH0Aconitate hydratase 1
trEMBLtr|G7JYQ8|G7JYQ8_MEDTR0Cytoplasmic-like aconitate hydratase {ECO:0000313|EMBL:AES95205.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00221211294218085-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01681ACO, acnA EC:4.2.1.3 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation pathways in prokaryotesmap00720


Gene Ontology

biological_process

GO:0008152  metabolic process



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000221s00012529.1PF00330.15Aconitase625692.40E-146
Glyur000221s00012529.1PF00694.14Aconitase_C6988261.00E-45


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control66.864
SRR1783600control66.999
SRR1783602moderate drought stress52.501
SRR1811619moderate drought stress52.287

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain63.828
DRR006520Root Summer glycyrrhizin high producing strain63.325
DRR006521Root Winter glycyrrhizin high producing strain62.005
DRR006522Root Winter glycyrrhizin high producing strain60.541
DRR006523Root Summer glycyrrhizin low producing strain50.594
DRR006524Root Summer glycyrrhizin low producing strain50.238
DRR006525Leaf Summer glycyrrhizin high producing strain41.891
DRR006526Leaf Summer glycyrrhizin high producing strain41.739

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)172.604
SRR2868004Drought Stress(Tissue:root)136.429
SRR2967015Control (Tissue:root)124.978

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave68.507
SRR9715740Leave49.874
SRR9715741Leave73.424
SRR9715739Root43.066
SRR9715742Root88.221
SRR9715743Root82.597

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h125.873
SRR8749028MeJA induced 9h162.872
SRR8749029MeJA induced 9h118.594
SRR8749030Uninduced116.679
SRR8749031Uninduced112.490
SRR8749032Uninduced81.448

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root111.328
SRR8400027Control-Root109.191

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved