Gene detail information of Glyur000221s00012531.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35840.1 | 1.00E-76 | RING/U-box superfamily protein |
| NR | XP_004512177.1 | 7.93E-137 | PREDICTED: NEP1-interacting protein 1-like [Cicer arietinum] |
| Swissprot | tr|Q8GT75|NIP1_ARATH | 2.00E-109 | NEP1-interacting protein 1 |
| trEMBL | tr|V7CKP7|V7CKP7_PHAVU | 1.00E-136 | Uncharacterized protein {ECO:0000313|EMBL:ESW29865.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00221 | 231426 | 233649 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000221s00012531.1 | PF13488.1 | Gly-zipper_Omp | 52 | 85 | 1.20E-05 |
| Glyur000221s00012531.1 | PF13639.1 | zf-RING_2 | 173 | 216 | 2.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.859 |
| SRR1783600 | control | 3.936 |
| SRR1783602 | moderate drought stress | 3.872 |
| SRR1811619 | moderate drought stress | 4.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.967 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.143 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.467 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.472 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.479 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.144 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.004 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.441 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.840 |
| SRR2967015 | Control (Tissue:root) | 17.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 42.840 |
| SRR9715740 | Leave | 54.731 |
| SRR9715741 | Leave | 42.763 |
| SRR9715739 | Root | 6.745 |
| SRR9715742 | Root | 11.434 |
| SRR9715743 | Root | 10.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.731 |
| SRR8749028 | MeJA induced 9h | 12.525 |
| SRR8749029 | MeJA induced 9h | 16.815 |
| SRR8749030 | Uninduced | 27.721 |
| SRR8749031 | Uninduced | 23.341 |
| SRR8749032 | Uninduced | 26.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.091 |
| SRR8400027 | Control-Root | 9.006 |