Gene detail information of Glyur000223s00013784.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G13930.10serine hydroxymethyltransferase 4
NRXP_003629601.10Serine hydroxymethyltransferase [Medicago truncatula]
COGYP_003289423.13.00E-126glycine hydroxymethyltransferase [Rhodothermus marinus DSM 4252]
Swissprottr|O23254|GLYC4_ARATH0Serine hydroxymethyltransferase 4
trEMBLtr|G7LH57|G7LH57_MEDTR0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0022363179+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00600glyA, SHMT EC:2.1.2.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0006544  glycine metabolic process

GO:0006563  L-serine metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004372  glycine hydroxymethyltransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000223s00013784.1PF00464.14SHMT134121.40E-186


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.263
SRR1783600control33.195
SRR1783602moderate drought stress25.849
SRR1811619moderate drought stress25.489

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain52.579
DRR006520Root Summer glycyrrhizin high producing strain52.250
DRR006521Root Winter glycyrrhizin high producing strain5.277
DRR006522Root Winter glycyrrhizin high producing strain5.253
DRR006523Root Summer glycyrrhizin low producing strain39.169
DRR006524Root Summer glycyrrhizin low producing strain39.900
DRR006525Leaf Summer glycyrrhizin high producing strain36.765
DRR006526Leaf Summer glycyrrhizin high producing strain36.556

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)106.481
SRR2868004Drought Stress(Tissue:root)64.535
SRR2967015Control (Tissue:root)54.840

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave55.157
SRR9715740Leave43.150
SRR9715741Leave41.891
SRR9715739Root48.922
SRR9715742Root59.017
SRR9715743Root57.564

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.123
SRR8749028MeJA induced 9h14.636
SRR8749029MeJA induced 9h11.077
SRR8749030Uninduced4.908
SRR8749031Uninduced2.161
SRR8749032Uninduced2.344

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root56.376
SRR8400027Control-Root49.380

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved