Gene detail information of Glyur000223s00013796.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13930.10Chalcone and stilbene synthase family protein
NRXP_003610851.10Chalcone synthase [Medicago truncatula]
COGYP_004652342.12.00E-41hypothetical protein PUV_15380 [Parachlamydia acanthamoebae UV-7]
Swissprottr|P24826|CHS1_SOYBN0Chalcone synthase 1
trEMBLtr|Q6X0M8|Q6X0M8_SOYBN0Chalcone synthase CHS1 {ECO:0000313|EMBL:AAQ62597.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002236532272515+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00660CHS EC:2.3.1.74 Flavonoid biosynthesis map00941
Circadian rhythm - plantmap04712


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016746  transferase activity, transferring acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000223s00013796.1PF00195.14Chal_sti_synt_N32191.10E-112
Glyur000223s00013796.1PF02797.10Chal_sti_synt_C2293768.40E-78
Glyur000223s00013796.1PF00195.14Chal_sti_synt_N3815974.80E-112
Glyur000223s00013796.1PF02797.10Chal_sti_synt_C6076554.30E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.136
SRR1783600control0.146
SRR1783602moderate drought stress0.374
SRR1811619moderate drought stress0.229

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.167
DRR006520Root Summer glycyrrhizin high producing strain3.225
DRR006521Root Winter glycyrrhizin high producing strain0.479
DRR006522Root Winter glycyrrhizin high producing strain0.485
DRR006523Root Summer glycyrrhizin low producing strain1.546
DRR006524Root Summer glycyrrhizin low producing strain1.589
DRR006525Leaf Summer glycyrrhizin high producing strain3.048
DRR006526Leaf Summer glycyrrhizin high producing strain3.377

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.600
SRR2868004Drought Stress(Tissue:root)69.108
SRR2967015Control (Tissue:root)29.615

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.699
SRR9715740Leave5.242
SRR9715741Leave69.757
SRR9715739Root8.891
SRR9715742Root15.631
SRR9715743Root15.525

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.425
SRR8749028MeJA induced 9h4.345
SRR8749029MeJA induced 9h3.080
SRR8749030Uninduced92.677
SRR8749031Uninduced78.801
SRR8749032Uninduced43.177

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.979
SRR8400027Control-Root14.176

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved