Gene detail information of Glyur000223s00013797.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13930.11.00E-134Chalcone and stilbene synthase family protein
NRBAF49290.10chalcone synthase [Clitoria ternatea]
COGYP_680369.18.00E-29naringenin-chalcone synthase [Cytophaga hutchinsonii ATCC 33406]
Swissprottr|P51082|CHSB_PEA0Chalcone synthase 1B
trEMBLtr|A4F1Q7|A4F1Q7_CLITE0Chalcone synthase {ECO:0000313|EMBL:BAF49290.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002236983371108-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00660CHS EC:2.3.1.74 Flavonoid biosynthesis map00941
Circadian rhythm - plantmap04712


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016746  transferase activity, transferring acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000223s00013797.1PF00195.14Chal_sti_synt_N12094.20E-123
Glyur000223s00013797.1PF02797.10Chal_sti_synt_C2192704.30E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.137
SRR1783600control0.147
SRR1783602moderate drought stress0.347
SRR1811619moderate drought stress0.424

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.095
DRR006520Root Summer glycyrrhizin high producing strain2.887
DRR006521Root Winter glycyrrhizin high producing strain0.150
DRR006522Root Winter glycyrrhizin high producing strain0.154
DRR006523Root Summer glycyrrhizin low producing strain1.322
DRR006524Root Summer glycyrrhizin low producing strain1.439
DRR006525Leaf Summer glycyrrhizin high producing strain3.183
DRR006526Leaf Summer glycyrrhizin high producing strain3.506

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.036
SRR2868004Drought Stress(Tissue:root)70.409
SRR2967015Control (Tissue:root)32.863

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.791
SRR9715740Leave3.465
SRR9715741Leave67.948
SRR9715739Root9.075
SRR9715742Root22.225
SRR9715743Root19.617

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.870
SRR8749028MeJA induced 9h6.490
SRR8749029MeJA induced 9h4.340
SRR8749030Uninduced90.917
SRR8749031Uninduced66.740
SRR8749032Uninduced43.587

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.181
SRR8400027Control-Root8.361

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved