Gene detail information of Glyur000223s00013819.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G28345.12.00E-49ABC transporter family protein
NRXP_003569704.12.12E-132PREDICTED: putative ABC transporter B family member 8 [Brachypodium distachyon]
COGYP_006867001.15.00E-38lipid A ABC-type exporter, ATP-binding/permease protein MsbA [Psychroflexus torquis ATCC 700755]
Swissprottr|Q9LHK4|AB8B_ARATH1.00E-72Putative ABC transporter B family member 8
trEMBLtr|I1HR38|I1HR38_BRADI8.00E-133Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G48610.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00223209852212301+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000223s00013819.1PF00005.22ABC_tran8414.50E-09
Glyur000223s00013819.1PF00664.18ABC_membrane2182713.80E-08
Glyur000223s00013819.1PF00664.18ABC_membrane2723643.20E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.307
SRR1783600control5.273
SRR1783602moderate drought stress5.109
SRR1811619moderate drought stress4.924

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.539
DRR006520Root Summer glycyrrhizin high producing strain1.179
DRR006521Root Winter glycyrrhizin high producing strain0.046
DRR006522Root Winter glycyrrhizin high producing strain0.089
DRR006523Root Summer glycyrrhizin low producing strain0.347
DRR006524Root Summer glycyrrhizin low producing strain0.405
DRR006525Leaf Summer glycyrrhizin high producing strain0.072
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.716
SRR2868004Drought Stress(Tissue:root)7.111
SRR2967015Control (Tissue:root)8.542

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.028
SRR9715740Leave0.000
SRR9715741Leave0.027
SRR9715739Root0.275
SRR9715742Root2.829
SRR9715743Root2.137

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.036
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.662
SRR8749031Uninduced0.058
SRR8749032Uninduced0.507

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.334
SRR8400027Control-Root3.449

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved