Gene detail information of Glyur000223s00013823.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G42520.10P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRXP_003524948.10PREDICTED: DEAD-box ATP-dependent RNA helicase 37 isoform X1 [Glycine max]
COGNP_355291.16.00E-95ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
Swissprottr|Q84W89|RH37_ARATH0DEAD-box ATP-dependent RNA helicase 37
trEMBLtr|V7CR29|V7CR29_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW31391.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00223223528229119-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11594DDX3X, bel EC:3.6.4.13 RIG-I-like receptor signaling pathway map04622
Viral carcinogenesismap05203
Hepatitis Bmap05161


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000223s00013823.1PF00270.24DEAD1813623.40E-46
Glyur000223s00013823.1PF00271.26Helicase_C4385128.50E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.582
SRR1783600control22.813
SRR1783602moderate drought stress20.540
SRR1811619moderate drought stress20.549

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.044
DRR006520Root Summer glycyrrhizin high producing strain36.922
DRR006521Root Winter glycyrrhizin high producing strain33.364
DRR006522Root Winter glycyrrhizin high producing strain32.522
DRR006523Root Summer glycyrrhizin low producing strain39.922
DRR006524Root Summer glycyrrhizin low producing strain39.715
DRR006525Leaf Summer glycyrrhizin high producing strain26.475
DRR006526Leaf Summer glycyrrhizin high producing strain26.167

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.520
SRR2868004Drought Stress(Tissue:root)44.849
SRR2967015Control (Tissue:root)54.599

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.941
SRR9715740Leave32.420
SRR9715741Leave34.223
SRR9715739Root26.549
SRR9715742Root40.432
SRR9715743Root37.939

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h42.645
SRR8749028MeJA induced 9h34.159
SRR8749029MeJA induced 9h30.988
SRR8749030Uninduced20.329
SRR8749031Uninduced18.304
SRR8749032Uninduced21.536

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.635
SRR8400027Control-Root35.059

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved