Gene detail information of Glyur000224s00017363.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G06600.20ubiquitin-specific protease 12
NRXP_011032955.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Populus euphratica]
Swissprottr|Q9FPT1|UBP12_ARATH0Ubiquitin carboxyl-terminal hydrolase 12
trEMBLtr|G7I2I7|G7I2I7_MEDTR0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0022459883101356+


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11838USP7, UBP15 EC:3.4.19.12 FoxO signaling pathway map04068
Viral carcinogenesismap05203
Herpes simplex infectionmap05168
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0005515  protein binding

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000224s00017363.1PF00917.21MATH651836.50E-13
Glyur000224s00017363.1PF00443.24UCH2005222.70E-53
Glyur000224s00017363.1PF12436.3USP7_ICP0_bdg6138381.60E-69
Glyur000224s00017363.1PF14533.1USP7_C284710414.70E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.955
SRR1783600control11.975
SRR1783602moderate drought stress12.697
SRR1811619moderate drought stress12.439

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.948
DRR006520Root Summer glycyrrhizin high producing strain14.823
DRR006521Root Winter glycyrrhizin high producing strain13.450
DRR006522Root Winter glycyrrhizin high producing strain12.869
DRR006523Root Summer glycyrrhizin low producing strain12.586
DRR006524Root Summer glycyrrhizin low producing strain12.928
DRR006525Leaf Summer glycyrrhizin high producing strain7.345
DRR006526Leaf Summer glycyrrhizin high producing strain7.560

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.456
SRR2868004Drought Stress(Tissue:root)20.860
SRR2967015Control (Tissue:root)20.944

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.726
SRR9715740Leave11.112
SRR9715741Leave11.528
SRR9715739Root1.745
SRR9715742Root14.602
SRR9715743Root12.382

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.313
SRR8749028MeJA induced 9h13.541
SRR8749029MeJA induced 9h8.575
SRR8749030Uninduced3.557
SRR8749031Uninduced3.164
SRR8749032Uninduced2.989

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.225
SRR8400027Control-Root22.530

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved