Gene detail information of Glyur000224s00017367.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35910.1 | 5.00E-15 | RING/U-box superfamily protein |
| NR | XP_006589038.1 | 5.44E-69 | PREDICTED: RING-H2 finger protein ATL70-like [Glycine max] |
| Swissprot | tr|Q9FG21|ATL71_ARATH | 1.00E-36 | Putative RING-H2 finger protein ATL71 |
| trEMBL | tr|K7LIW6|K7LIW6_SOYBN | 2.00E-69 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G23701.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00224 | 99146 | 99676 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000224s00017367.1 | PF13639.1 | zf-RING_2 | 111 | 153 | 1.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.237 |
| SRR1811619 | moderate drought stress | 0.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.206 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.206 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.886 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.921 |
| SRR2967015 | Control (Tissue:root) | 1.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.128 |
| SRR9715740 | Leave | 0.728 |
| SRR9715741 | Leave | 1.084 |
| SRR9715739 | Root | 0.981 |
| SRR9715742 | Root | 0.113 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.476 |
| SRR8749028 | MeJA induced 9h | 4.282 |
| SRR8749029 | MeJA induced 9h | 2.493 |
| SRR8749030 | Uninduced | 2.669 |
| SRR8749031 | Uninduced | 2.419 |
| SRR8749032 | Uninduced | 3.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.375 |
| SRR8400027 | Control-Root | 0.527 |