Gene detail information of Glyur000224s00017368.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52060.2 | 2.00E-90 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | XP_004498057.1 | 0 | PREDICTED: uncharacterized protein LOC101501376 [Cicer arietinum] |
| trEMBL | tr|I3SYZ7|I3SYZ7_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK45489.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00224 | 104520 | 108597 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000224s00017368.1 | PF02485.16 | Branch | 71 | 319 | 4.30E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.933 |
| SRR1783600 | control | 4.976 |
| SRR1783602 | moderate drought stress | 14.412 |
| SRR1811619 | moderate drought stress | 14.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.202 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.110 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.222 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.255 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.431 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.065 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.747 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.856 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.782 |
| SRR2967015 | Control (Tissue:root) | 28.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.471 |
| SRR9715740 | Leave | 17.617 |
| SRR9715741 | Leave | 13.477 |
| SRR9715739 | Root | 22.056 |
| SRR9715742 | Root | 16.580 |
| SRR9715743 | Root | 17.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.813 |
| SRR8749028 | MeJA induced 9h | 1.417 |
| SRR8749029 | MeJA induced 9h | 0.586 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.800 |
| SRR8400027 | Control-Root | 23.508 |