Gene detail information of Glyur000224s00017375.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27960.2 | 2.00E-12 | ubiquitin conjugating enzyme 9 |
| NR | XP_010910518.1 | 2.58E-14 | PREDICTED: ubiquitin-conjugating enzyme E2 5B-like [Elaeis guineensis] |
| Swissprot | tr|P35135|UBC4_SOLLC | 3.00E-15 | Ubiquitin-conjugating enzyme E2-17 kDa |
| trEMBL | tr|K7KAC5|K7KAC5_SOYBN | 3.00E-14 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40330.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00224 | 127191 | 127929 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.342 |
| SRR1783600 | control | 2.162 |
| SRR1783602 | moderate drought stress | 4.466 |
| SRR1811619 | moderate drought stress | 5.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.062 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.178 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 35.204 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.351 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.249 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.264 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.930 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.484 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.711 |
| SRR2967015 | Control (Tissue:root) | 13.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.400 |
| SRR9715740 | Leave | 0.651 |
| SRR9715741 | Leave | 2.268 |
| SRR9715739 | Root | 0.119 |
| SRR9715742 | Root | 1.494 |
| SRR9715743 | Root | 1.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.503 |
| SRR8749028 | MeJA induced 9h | 3.091 |
| SRR8749029 | MeJA induced 9h | 0.073 |
| SRR8749030 | Uninduced | 0.838 |
| SRR8749031 | Uninduced | 0.089 |
| SRR8749032 | Uninduced | 0.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.721 |
| SRR8400027 | Control-Root | 4.235 |