Gene detail information of Glyur000225s00014731.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40470.1 | 6.00E-66 | LOB domain-containing protein 15 |
| NR | XP_004502856.1 | 6.34E-114 | PREDICTED: LOB domain-containing protein 15-like [Cicer arietinum] |
| Swissprot | tr|Q8L5T5|LBD15_ARATH | 8.00E-83 | LOB domain-containing protein 15 |
| trEMBL | tr|I1KBA6|I1KBA6_SOYBN | 2.00E-112 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G15050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00225 | 121086 | 122533 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000225s00014731.1 | PF03195.9 | DUF260 | 44 | 143 | 4.00E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.880 |
| SRR1783600 | control | 9.216 |
| SRR1783602 | moderate drought stress | 8.691 |
| SRR1811619 | moderate drought stress | 8.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.730 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.607 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.655 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.519 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.521 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.224 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.540 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.475 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.398 |
| SRR2967015 | Control (Tissue:root) | 7.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.437 |
| SRR9715740 | Leave | 1.519 |
| SRR9715741 | Leave | 1.014 |
| SRR9715739 | Root | 8.172 |
| SRR9715742 | Root | 5.193 |
| SRR9715743 | Root | 4.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 74.828 |
| SRR8749028 | MeJA induced 9h | 73.640 |
| SRR8749029 | MeJA induced 9h | 59.120 |
| SRR8749030 | Uninduced | 58.245 |
| SRR8749031 | Uninduced | 13.736 |
| SRR8749032 | Uninduced | 18.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.234 |
| SRR8400027 | Control-Root | 3.302 |