Gene detail information of Glyur000225s00014738.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G10940.11.00E-111dual specificity protein phosphatase (DsPTP1) family protein
NRKEH35573.17.12E-178dual specificity phosphatase domain protein [Medicago truncatula]
COGYP_007175180.15.00E-10protein-tyrosine phosphatase [Caldisphaera lagunensis DSM 15908]
Swissprottr|Q9SRK5|LSF2_ARATH3.00E-139Phosphoglucan phosphatase LSF2, chloroplastic (Precursor)
trEMBLtr|A0A072V2I1|A0A072V2I1_MEDTR3.00E-178Dual specificity phosphatase domain protein {ECO:0000313|EMBL:KEH35573.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00225165781168464+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006470  protein dephosphorylation

GO:0016311  dephosphorylation


molecular_function

GO:0008138  protein tyrosine/serine/threonine phosphatase activity

GO:0016791  phosphatase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000225s00014738.1PF00782.15DSPc1282535.10E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control43.813
SRR1783600control44.304
SRR1783602moderate drought stress25.353
SRR1811619moderate drought stress25.087

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.226
DRR006520Root Summer glycyrrhizin high producing strain22.983
DRR006521Root Winter glycyrrhizin high producing strain14.390
DRR006522Root Winter glycyrrhizin high producing strain14.042
DRR006523Root Summer glycyrrhizin low producing strain25.671
DRR006524Root Summer glycyrrhizin low producing strain26.008
DRR006525Leaf Summer glycyrrhizin high producing strain75.360
DRR006526Leaf Summer glycyrrhizin high producing strain74.493

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.850
SRR2868004Drought Stress(Tissue:root)16.785
SRR2967015Control (Tissue:root)20.108

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave108.922
SRR9715740Leave140.820
SRR9715741Leave120.733
SRR9715739Root2.977
SRR9715742Root13.724
SRR9715743Root11.702

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.372
SRR8749028MeJA induced 9h17.614
SRR8749029MeJA induced 9h13.648
SRR8749030Uninduced18.444
SRR8749031Uninduced5.842
SRR8749032Uninduced4.159

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.099
SRR8400027Control-Root47.998

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved