Gene detail information of Glyur000225s00014746.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G10920.11.00E-103manganese superoxide dismutase 1
NRXP_004502849.13.79E-161PREDICTED: superoxide dismutase [Mn], mitochondrial-like [Cicer arietinum]
COGYP_007269.11.00E-87superoxide dismutase (Mn) [Candidatus Protochlamydia amoebophila UWE25]
Swissprottr|P27084|SODM_PEA5.00E-149Superoxide dismutase [Mn], mitochondrial (Precursor)
trEMBLtr|I1JYA9|I1JYA9_SOYBN5.00E-156Superoxide dismutase {ECO:0000256|RuleBase:RU000414}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00225196439200248+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04564SOD2 EC:1.15.1.1 MAPK signaling pathway - fly map04013
FoxO signaling pathwaymap04068
Peroxisomemap04146
Longevity regulating pathway - mammalmap04211
Longevity regulating pathway - wormmap04212
Longevity regulating pathway - multiple speciesmap04213
Huntington's diseasemap05016


Gene Ontology

biological_process

GO:0006801  superoxide metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004784  superoxide dismutase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000225s00014746.1PF00081.17Sod_Fe_N391191.40E-33
Glyur000225s00014746.1PF02777.13Sod_Fe_C1292341.20E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control350.816
SRR1783600control351.981
SRR1783602moderate drought stress243.632
SRR1811619moderate drought stress243.028

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain278.471
DRR006520Root Summer glycyrrhizin high producing strain275.798
DRR006521Root Winter glycyrrhizin high producing strain224.514
DRR006522Root Winter glycyrrhizin high producing strain215.589
DRR006523Root Summer glycyrrhizin low producing strain190.869
DRR006524Root Summer glycyrrhizin low producing strain188.355
DRR006525Leaf Summer glycyrrhizin high producing strain98.906
DRR006526Leaf Summer glycyrrhizin high producing strain98.395

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)270.902
SRR2868004Drought Stress(Tissue:root)220.527
SRR2967015Control (Tissue:root)184.030

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave106.350
SRR9715740Leave112.923
SRR9715741Leave118.028
SRR9715739Root220.240
SRR9715742Root210.570
SRR9715743Root200.244

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h174.413
SRR8749028MeJA induced 9h196.057
SRR8749029MeJA induced 9h181.423
SRR8749030Uninduced113.735
SRR8749031Uninduced69.686
SRR8749032Uninduced65.313

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root263.607
SRR8400027Control-Root259.388

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved