Gene detail information of Glyur000225s00014755.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G56310.10Melibiase family protein
NRKEH35559.10alpha-galactosidase-like protein [Medicago truncatula]
COGYP_004960271.11.00E-121alpha-galactosidase [Streptomyces bingchenggensis BCW-1]
Swissprottr|P14749|AGAL_CYATE0Alpha-galactosidase (Precursor)
trEMBLtr|A0A072V0K8|A0A072V0K8_MEDTR0Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00225218593225020-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH27


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07407E3.2.1.22B, galA, rafA EC:3.2.1.22 Galactose metabolism map00052
Glycerolipid metabolismmap00561
Sphingolipid metabolismmap00600
Glycosphingolipid biosynthesis - globo and isoglobo seriesmap00603


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000225s00014755.1PF02065.13Melibiase661554.30E-18
Glyur000225s00014755.1PF02065.13Melibiase1732279.90E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.554
SRR1783600control42.711
SRR1783602moderate drought stress52.073
SRR1811619moderate drought stress51.698

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain45.918
DRR006520Root Summer glycyrrhizin high producing strain45.699
DRR006521Root Winter glycyrrhizin high producing strain24.577
DRR006522Root Winter glycyrrhizin high producing strain23.880
DRR006523Root Summer glycyrrhizin low producing strain37.614
DRR006524Root Summer glycyrrhizin low producing strain38.051
DRR006525Leaf Summer glycyrrhizin high producing strain24.892
DRR006526Leaf Summer glycyrrhizin high producing strain24.643

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)84.213
SRR2868004Drought Stress(Tissue:root)89.315
SRR2967015Control (Tissue:root)100.755

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave46.030
SRR9715740Leave47.968
SRR9715741Leave53.720
SRR9715739Root41.898
SRR9715742Root45.111
SRR9715743Root44.537

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h37.334
SRR8749028MeJA induced 9h52.371
SRR8749029MeJA induced 9h26.759
SRR8749030Uninduced37.687
SRR8749031Uninduced17.163
SRR8749032Uninduced26.955

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root82.236
SRR8400027Control-Root74.179

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved