Gene detail information of Glyur000226s00010830.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G65650.18.00E-138Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
NRXP_003556440.10PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5 [Glycine max]
trEMBLtr|I1NIJ5|I1NIJ5_SOYBN0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU361215}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002269187895631-


Gene family

Gene familysubfamily
Ubiquitin FamilyUCH


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


cellular_component

GO:0005622  intracellular


molecular_function

GO:0004843  thiol-dependent ubiquitin-specific protease activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000226s00010830.1PF01088.16Peptidase_C121123182.00E-72


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control37.156
SRR1783600control37.094
SRR1783602moderate drought stress22.895
SRR1811619moderate drought stress22.995

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain47.044
DRR006520Root Summer glycyrrhizin high producing strain46.283
DRR006521Root Winter glycyrrhizin high producing strain31.366
DRR006522Root Winter glycyrrhizin high producing strain30.741
DRR006523Root Summer glycyrrhizin low producing strain34.739
DRR006524Root Summer glycyrrhizin low producing strain35.169
DRR006525Leaf Summer glycyrrhizin high producing strain29.745
DRR006526Leaf Summer glycyrrhizin high producing strain29.835

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)58.981
SRR2868004Drought Stress(Tissue:root)53.698
SRR2967015Control (Tissue:root)49.769

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.483
SRR9715740Leave44.686
SRR9715741Leave49.402
SRR9715739Root6.168
SRR9715742Root23.164
SRR9715743Root22.767

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h75.343
SRR8749028MeJA induced 9h37.069
SRR8749029MeJA induced 9h48.024
SRR8749030Uninduced26.142
SRR8749031Uninduced24.067
SRR8749032Uninduced19.752

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root49.934
SRR8400027Control-Root49.797

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved