Gene detail information of Glyur000226s00010834.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02830.1 | 9.00E-139 | zinc finger protein 1 |
| NR | XP_006606433.1 | 0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SWF9|ZFNL_PEA | 0 | Zinc finger CCCH domain-containing protein ZFN-like |
| trEMBL | tr|I1NIJ3|I1NIJ3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G36140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00226 | 109461 | 116159 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000226s00010834.1 | PF00642.19 | zf-CCCH | 39 | 65 | 5.20E-09 |
| Glyur000226s00010834.1 | PF00642.19 | zf-CCCH | 117 | 137 | 5.80E-08 |
| Glyur000226s00010834.1 | PF00642.19 | zf-CCCH | 159 | 183 | 6.30E-10 |
| Glyur000226s00010834.1 | PF00642.19 | zf-CCCH | 318 | 344 | 9.90E-10 |
| Glyur000226s00010834.1 | PF00642.19 | zf-CCCH | 364 | 390 | 8.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.242 |
| SRR1783600 | control | 11.266 |
| SRR1783602 | moderate drought stress | 7.970 |
| SRR1811619 | moderate drought stress | 7.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.527 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.243 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.378 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.960 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.577 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.519 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.912 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.827 |
| SRR2868004 | Drought Stress(Tissue:root) | 31.921 |
| SRR2967015 | Control (Tissue:root) | 23.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 39.349 |
| SRR9715740 | Leave | 40.737 |
| SRR9715741 | Leave | 38.545 |
| SRR9715739 | Root | 12.203 |
| SRR9715742 | Root | 11.020 |
| SRR9715743 | Root | 10.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.269 |
| SRR8749028 | MeJA induced 9h | 22.243 |
| SRR8749029 | MeJA induced 9h | 29.098 |
| SRR8749030 | Uninduced | 24.452 |
| SRR8749031 | Uninduced | 39.037 |
| SRR8749032 | Uninduced | 34.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.433 |
| SRR8400027 | Control-Root | 20.888 |