Gene detail information of Glyur000226s00010845.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08620.20Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
NRXP_003555549.20PREDICTED: probable lysine-specific demethylase JMJ14-like isoform X1 [Glycine max]
Swissprottr|C0SUT9|JMJ16_ARATH0Putative lysine-specific demethylase JMJ16
trEMBLtr|K7N4Y4|K7N4Y4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G36070.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00226173019182045+


Gene family

Gene familysubfamily
Transcription Factors FamilyJumonji
EAR motif-containing ProteinsJumonji


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

cellular_component

GO:0005634  nucleus



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000226s00010845.1PF02375.12JmjN1511836.40E-17
Glyur000226s00010845.1PF02373.17JmjC3895054.20E-46
Glyur000226s00010845.1PF02928.11zf-C5HC26126632.70E-14
Glyur000226s00010845.1PF05964.9FYRN104010843.50E-09
Glyur000226s00010845.1PF05965.9FYRC109011764.00E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.539
SRR1783600control9.575
SRR1783602moderate drought stress9.614
SRR1811619moderate drought stress9.490

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.264
DRR006520Root Summer glycyrrhizin high producing strain9.196
DRR006521Root Winter glycyrrhizin high producing strain10.948
DRR006522Root Winter glycyrrhizin high producing strain10.616
DRR006523Root Summer glycyrrhizin low producing strain10.657
DRR006524Root Summer glycyrrhizin low producing strain10.575
DRR006525Leaf Summer glycyrrhizin high producing strain5.454
DRR006526Leaf Summer glycyrrhizin high producing strain5.496

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.575
SRR2868004Drought Stress(Tissue:root)16.170
SRR2967015Control (Tissue:root)15.147

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.258
SRR9715740Leave9.062
SRR9715741Leave11.707
SRR9715739Root1.745
SRR9715742Root11.542
SRR9715743Root9.896

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.759
SRR8749028MeJA induced 9h14.362
SRR8749029MeJA induced 9h8.662
SRR8749030Uninduced10.541
SRR8749031Uninduced13.159
SRR8749032Uninduced9.589

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.160
SRR8400027Control-Root12.096

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved