Gene detail information of Glyur000226s00010848.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G32900.10UDP-Glycosyltransferase superfamily protein
NRAAC70779.10granule-bound glycogen (starch) synthase [Astragalus membranaceus]
COGYP_003371734.14.00E-86glycogen/starch synthase [Pirellula staleyi DSM 6068]
Swissprottr|Q43092|SSG1_PEA0Granule-bound starch synthase 1, chloroplastic/amyloplastic (Precursor)
trEMBLtr|Q9ZSQ5|Q9ZSQ5_ASTPN0Starch synthase, chloroplastic/amyloplastic {ECO:0000256|RuleBase:RU361232}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00226197345202367+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT5


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13679WAXY EC:2.4.1.242 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0009058  biosynthetic process

GO:0009250  glucan biosynthetic process


molecular_function

GO:0009011  starch synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000226s00010848.1PF08323.6Glyco_transf_5843435.70E-73
Glyur000226s00010848.1PF00534.15Glycos_transf_14005214.20E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1309.615
SRR1783600control1332.125
SRR1783602moderate drought stress942.952
SRR1811619moderate drought stress944.840

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2030.042
DRR006520Root Summer glycyrrhizin high producing strain2031.135
DRR006521Root Winter glycyrrhizin high producing strain178.466
DRR006522Root Winter glycyrrhizin high producing strain175.224
DRR006523Root Summer glycyrrhizin low producing strain937.438
DRR006524Root Summer glycyrrhizin low producing strain940.351
DRR006525Leaf Summer glycyrrhizin high producing strain256.746
DRR006526Leaf Summer glycyrrhizin high producing strain251.096

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)334.928
SRR2868004Drought Stress(Tissue:root)204.172
SRR2967015Control (Tissue:root)152.358

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave258.868
SRR9715740Leave302.801
SRR9715741Leave227.906
SRR9715739Root599.352
SRR9715742Root1089.100
SRR9715743Root1022.268

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.105
SRR8749028MeJA induced 9h14.165
SRR8749029MeJA induced 9h21.767
SRR8749030Uninduced2.260
SRR8749031Uninduced0.627
SRR8749032Uninduced3.065

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1272.217
SRR8400027Control-Root1427.782

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved