Gene detail information of Glyur000226s00010849.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32860.1 | 7.00E-142 | Glycosyl hydrolase superfamily protein |
| NR | AIR93906.1 | 0 | glucanase [Cicer arietinum] |
| Swissprot | tr|Q8L868|E1311_ARATH | 1.00E-176 | Glucan endo-1,3-beta-glucosidase 11 (Precursor) |
| trEMBL | tr|A0A089WWF8|A0A089WWF8_CICAR | 0 | Glucanase {ECO:0000313|EMBL:AIR93906.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00226 | 205881 | 209698 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000226s00010849.2 | PF00332.13 | Glyco_hydro_17 | 29 | 347 | 3.40E-96 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 60.429 |
| SRR1783600 | control | 61.880 |
| SRR1783602 | moderate drought stress | 51.068 |
| SRR1811619 | moderate drought stress | 53.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 89.883 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 88.821 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.762 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.431 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 116.611 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 117.105 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.855 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 32.509 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.771 |
| SRR2967015 | Control (Tissue:root) | 22.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.433 |
| SRR9715740 | Leave | 9.955 |
| SRR9715741 | Leave | 9.160 |
| SRR9715739 | Root | 17.501 |
| SRR9715742 | Root | 28.490 |
| SRR9715743 | Root | 23.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.164 |
| SRR8749028 | MeJA induced 9h | 3.157 |
| SRR8749029 | MeJA induced 9h | 3.373 |
| SRR8749030 | Uninduced | 0.267 |
| SRR8749031 | Uninduced | 0.168 |
| SRR8749032 | Uninduced | 0.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.813 |
| SRR8400027 | Control-Root | 36.563 |