Gene detail information of Glyur000226s00010851.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32810.2 | 7.00E-85 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_004495510.1 | 0 | PREDICTED: dentin sialophosphoprotein-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9C810|Y1342_ARATH | 2.00E-08 | PHD finger protein At1g33420 |
| trEMBL | tr|A0A072VXY1|A0A072VXY1_MEDTR | 0 | RING/FYVE/PHD zinc finger protein, putative {ECO:0000313|EMBL:KEH42910.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00226 | 224335 | 230777 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.963 |
| SRR1783600 | control | 13.051 |
| SRR1783602 | moderate drought stress | 17.488 |
| SRR1811619 | moderate drought stress | 17.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.750 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.868 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.763 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.057 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.505 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.343 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.557 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.890 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.549 |
| SRR2967015 | Control (Tissue:root) | 29.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.745 |
| SRR9715740 | Leave | 17.420 |
| SRR9715741 | Leave | 18.522 |
| SRR9715739 | Root | 2.031 |
| SRR9715742 | Root | 16.977 |
| SRR9715743 | Root | 13.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.545 |
| SRR8749028 | MeJA induced 9h | 14.515 |
| SRR8749029 | MeJA induced 9h | 11.266 |
| SRR8749030 | Uninduced | 13.328 |
| SRR8749031 | Uninduced | 12.926 |
| SRR8749032 | Uninduced | 11.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.775 |
| SRR8400027 | Control-Root | 23.012 |