Gene detail information of Glyur000227s00015114.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G16720.11.00E-36TOXICOS EN LEVADURA 2
NRXP_004508196.14.09E-91PREDICTED: RING-H2 finger protein ATL2-like [Cicer arietinum]
Swissprottr|Q8L9T5|ATL2_ARATH1.00E-59RING-H2 finger protein ATL2
trEMBLtr|A0A072UR51|A0A072UR51_MEDTR3.00E-87RING-H2 zinc finger protein {ECO:0000313|EMBL:KEH32299.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002273813138934-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000227s00015114.1PF13639.1zf-RING_21031461.50E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control49.820
SRR1783600control50.439
SRR1783602moderate drought stress23.445
SRR1811619moderate drought stress22.906

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain66.497
DRR006520Root Summer glycyrrhizin high producing strain66.679
DRR006521Root Winter glycyrrhizin high producing strain246.486
DRR006522Root Winter glycyrrhizin high producing strain245.565
DRR006523Root Summer glycyrrhizin low producing strain301.943
DRR006524Root Summer glycyrrhizin low producing strain300.127
DRR006525Leaf Summer glycyrrhizin high producing strain3.811
DRR006526Leaf Summer glycyrrhizin high producing strain3.768

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.007
SRR2868004Drought Stress(Tissue:root)5.968
SRR2967015Control (Tissue:root)7.738

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave56.151
SRR9715740Leave39.438
SRR9715741Leave41.264
SRR9715739Root407.210
SRR9715742Root289.042
SRR9715743Root285.745

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h150.025
SRR8749028MeJA induced 9h163.212
SRR8749029MeJA induced 9h201.167
SRR8749030Uninduced185.935
SRR8749031Uninduced50.222
SRR8749032Uninduced125.343

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.372
SRR8400027Control-Root24.066

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved