Gene detail

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Gene detail information of Glyur000227s00015117.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G15940.1	6.00E-97	Fumarylacetoacetate (FAA) hydrolase family
NR	AFK48921.1	3.06E-151	unknown [Lotus japonicus]
COG	YP_003290393.1	4.00E-67	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase [Rhodothermus marinus DSM 4252]
trEMBL	tr\|I3T8S9\|I3T8S9_LOTJA	1.00E-151	Uncharacterized protein {ECO:0000313\|EMBL:AFK48921.1}

Sequence

Transcript Sequence

>Glyur000227s00015117.1
GTTTTGGGTCTTTACGCGAATTTGCTTTTAGCATACGTAATAATCAATGAAGGGAATGAATTGGCAAAACGACGTGCCGTGGGTGACTGTGAGTAGTCATCGAGACAGCGGAAGAGTTGGGAAGNAGAGGAGGGAGATGGCAACGGCAGCTTGTCAGAAGCTTTTGGAATTGAGCACCAAGATCGTGGCTGTTGGCCGAAACTACGCCGCTCACGCTAAAGAACTAGGCAACGCCGTTCCCAAGGAGCCAGTATTGTTTCTGAAACCGACGTCGTCTTACTTGAAAAATGGCGGAACCATCCAAATCCCTCACAACGAGGGTTCTCTGCATCACGAGGTCGAGCTCGCCGTTGTCATCGGGAAGAAAGCCCGTGACGTGCCGGAATCCTCTGCCATGGATTTCGTTGCTGGTTATGCACTGGCACTGGATATGACTGCCAGGGACCTTCAATCTGCTGCTAAGTCTGCAGGTCTTCCATGGACTTTGGCAAAAGGCCAGGACACCTTCACACCAATTAGTTCCATTTTGCCCAAGACTACAGTACCANACCCTGATGATCTAGAATTATGGTTAAAGGTTGACGAGGAAATTCGGCAGAAGGGCTCAACCAAGGACATGATATTCAAGATTCCATTTTTAATTAGCCACATAAGCTCTGTCATGACATTGTTTGAAGGAGATGTCATACTAACTGGCACTCCCCCAGGTGTTGGCCCTGTTAAAGAAGGTCAAAAAATTACTGCGGGTATTACAGGTCTCGTGGACGTGGNGTTTAATGTTGAAAAAAGAAAAAGGCCCGGAAGTTCTTGATATTGGTATCTCTTGCCAAGGAGAAACAGGAGAGGGGGGAACACCATAAAAAAAGAACTCCATTATTTGGAGTAGAGTCTATACGCTACTTGTCAGTTTCTTTATTTTTTTTTCTTTCCTCTCATTGAATCAGTACTCTGTGTCTCGGTGGAAGTGCTATTTTATGCACGCGCCATGAAAATGGTGATAACTGTTTGATACAGTGGAAAATAAAGATTATGATGGAGCACATGGATTCGTTCAGTAAGAGGCCACTTGATTTATGATGGNGTCATAGATATTGCTATAGTATTACTATGTATCCATTTTTACCAAGAAACATCCAATAATAGTGCTGGCAAATATAGCATTACACTGAAAAGAAACAAACCAGCGATCAGCATGATATGAAAATCTTTCTCGTGTGTTACTATGAGTGGTAAGATTCTTATANACGACTCAATTACTTCCGCCGCCAATGGACCTGCAAGATATTCATATTTTGTTTCACCCCCTTTCCCCTTAACTACAAATAACATTATTCACATCACTCGTCTTAATAAAACACTTACACGAACATGAAGAGTTCAGAAACATGCACAGACCCACTATAATGAGAATAGACACAGCAAGAAATGAAGAACAAAGATGCAAACAGAGCAAGAACAGAGACACATGTCCAAGAACAAGAAGGCGCACAGAGCAAATTAGTTAGAATTTTCGAAAGAAATCATAGATGTGTTTGTTGATCTCATCGGCCCTTTCTTGGTGGAGGAAGTGCCCTGCCCCTTCGATTACAACCACATCCTCCAGAAGCGGCACATCTCTNTTGAACCCCCCTTTGTGAATGTAATCCTTTGCGCCGGGTGCATTATAGGTCAGGTCAAGATCACCCACAATAAACNTAACTGGAACTTTGATTTGGGCACCAGTCCACGGAGCAGTGAGCTCCCAATTTCTACAAAATTATTGCAACAGAAGCAATTAAGTAAATTAGTATCCATTTAACATTTAATNAGGTAGGAGATGAAGATAAACATACAGATCCAAATTTCTGTAGTAGTTCAATCCCCCAGTGAAGCCGGTCTTCTCATATTTGGAGGCATAGTAATTACATTCTTCTTCAGATAACCATGGGGGCAACACAATGGGGGAATCAATTGGGTGTCCAAACCCTTTACCCTNGGGCAGAAAAAGTGGACCAGGGTTGCGGTATGTGAGGAATTCCTTGAGGACTCTTGCAGTGCCAATCTGTGCAAACTCAGCTTCGATATCACCAGGTTCCTGTCATATTAATGCAGTTGAGCAACAACCACCACTTAGCAGTCAGCATCCCATACCAGAAGAGTAAAATGCTCTGAATACCAAAAGAACTCCCCATATAAATCCAAAATAACTAATTTATATATATTTTTTATATTAAAGAAAACAAAACAACATTAACAACAAAGAAAAGGAAGCGCTATTAAAATATGTTACTACTGGTCCCCCTCAACAGCACTAACTGAAATAGACAGTTACACATAGATCATAGCATAACAGAACAAACGGACCTGAAATCTGGAGATATAGTAATCATTTCCGTACACTGCTCGGAGGGTGTCAAGGGGTTTTCTTTTGGGGTGTCTGGGACTGAAAGCGACACTCAAGTTAACGAGAGCTTTGATACGATCAGGGCGATAGAGGGAAAGGGACCAAGCAGTGAGGGCTCCCCAGTCATGACCCACCACAAACACCTTCTCTTGTTCGCCGGCAACGGCGTCCAGAAGTCCGATGAGGTCACCGACGACGTGGAGGCTCGTGTAGGATGCCGGTGTGGCCGGCACGTCGGTGTCGCCGAAGCCACGGAGGTCCGGCGCCACGCAGCGGTAACCGAGGGAGGCCAGAGCCGTGATCTGGCGGCGCCAAGAATACCAAAGGTCGGGGAAGCCATGGATGAAGAGGATCAATGGGCCTTCACCCTTATCTGCTATGTGCATGTTTATGCCATTCACGCTCACTGTTCGGTGTTCTACCCCTTCCATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGATTCTGCTATGTGGTGGAAAGTGTGTATGGCACTATACGACTTGCTTTGTGGTTATGGTAATTAAGGACGACTAATGAGTTGTTCTNGCATTGCATGAGAAGATAANGAAACAGAATAAAGTAAGATCTCATCTTATCAATAATATTCCTGTTCCTAGCGTACGTGTCGCTTTTGCGTTTGTGGCTTTGTGTCATTTTTTTGAATAAAGATGGGTAGAGGTGTATAC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00227	44417	49591	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01557	FAHD1	EC:3.7.1.5	Tyrosine metabolism	map00350

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000227s00015117.1	PF01557.13	FAA_hydrolase	45	245	1.60E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.006
SRR1783600	control	20.484
SRR1783602	moderate drought stress	19.857
SRR1811619	moderate drought stress	19.552

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.963
DRR006520	Root Summer glycyrrhizin high producing strain	27.829
DRR006521	Root Winter glycyrrhizin high producing strain	40.718
DRR006522	Root Winter glycyrrhizin high producing strain	40.876
DRR006523	Root Summer glycyrrhizin low producing strain	34.087
DRR006524	Root Summer glycyrrhizin low producing strain	34.037
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.811
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.688

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	26.800
SRR2868004	Drought Stress(Tissue:root)	26.483
SRR2967015	Control (Tissue:root)	21.167

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	22.073
SRR9715740	Leave	19.005
SRR9715741	Leave	27.341
SRR9715739	Root	12.743
SRR9715742	Root	19.971
SRR9715743	Root	18.551

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.373
SRR8749028	MeJA induced 9h	31.010
SRR8749029	MeJA induced 9h	27.892
SRR8749030	Uninduced	23.259
SRR8749031	Uninduced	23.631
SRR8749032	Uninduced	20.343

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	23.297
SRR8400027	Control-Root	20.934