Gene detail information of Glyur000227s00015124.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06860.10multifunctional protein 2
NRXP_004508202.10PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein MFP2-like [Cicer arietinum]
COGYP_005887633.12.00E-140fatty oxidation complex alpha subunit [Marinobacter adhaerens HP15]
Swissprottr|Q39659|MFPA_CUCSA03-hydroxyacyl-CoA dehydrogenase
trEMBLtr|I1KMX5|I1KMX5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G37570.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002277972286858+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10527MFP2 EC:4.2.1.17 1.1.1.35 1.1.1.211 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0006631  fatty acid metabolic process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0003857  3-hydroxyacyl-CoA dehydrogenase activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000227s00015124.1PF00378.15ECH502779.70E-51
Glyur000227s00015124.1PF02737.133HCDH_N3485261.20E-59
Glyur000227s00015124.1PF00725.173HCDH5296226.20E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.466
SRR1783600control25.764
SRR1783602moderate drought stress26.461
SRR1811619moderate drought stress25.908

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.377
DRR006520Root Summer glycyrrhizin high producing strain21.194
DRR006521Root Winter glycyrrhizin high producing strain21.416
DRR006522Root Winter glycyrrhizin high producing strain21.065
DRR006523Root Summer glycyrrhizin low producing strain18.031
DRR006524Root Summer glycyrrhizin low producing strain17.900
DRR006525Leaf Summer glycyrrhizin high producing strain13.854
DRR006526Leaf Summer glycyrrhizin high producing strain13.572

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)45.034
SRR2868004Drought Stress(Tissue:root)54.355
SRR2967015Control (Tissue:root)61.936

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.749
SRR9715740Leave25.041
SRR9715741Leave43.263
SRR9715739Root14.595
SRR9715742Root30.210
SRR9715743Root26.499

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.050
SRR8749028MeJA induced 9h45.765
SRR8749029MeJA induced 9h15.779
SRR8749030Uninduced33.051
SRR8749031Uninduced34.171
SRR8749032Uninduced21.931

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root45.553
SRR8400027Control-Root45.203

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved