Gene detail information of Glyur000227s00015137.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02500.1 | 0 | UDP-xylosyltransferase 2 |
| NR | XP_004508217.1 | 0 | PREDICTED: putative glycosyltransferase 2-like [Cicer arietinum] |
| Swissprot | tr|Q9LZJ3|XXT1_ARATH | 0 | Xyloglucan 6-xylosyltransferase 1 |
| trEMBL | tr|G7JLH4|G7JLH4_MEDTR | 0 | Xyloglucan xylosyltransferase {ECO:0000313|EMBL:AES91869.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00227 | 194713 | 196083 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT34 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000227s00015137.1 | PF05637.7 | Glyco_transf_34 | 144 | 383 | 4.80E-74 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 136.689 |
| SRR1783600 | control | 137.367 |
| SRR1783602 | moderate drought stress | 90.954 |
| SRR1811619 | moderate drought stress | 90.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 87.974 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 87.278 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 52.468 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 51.160 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 164.267 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 159.321 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.571 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 107.145 |
| SRR2868004 | Drought Stress(Tissue:root) | 87.248 |
| SRR2967015 | Control (Tissue:root) | 87.993 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 66.088 |
| SRR9715740 | Leave | 51.283 |
| SRR9715741 | Leave | 54.129 |
| SRR9715739 | Root | 221.319 |
| SRR9715742 | Root | 150.533 |
| SRR9715743 | Root | 148.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.093 |
| SRR8749028 | MeJA induced 9h | 61.792 |
| SRR8749029 | MeJA induced 9h | 46.002 |
| SRR8749030 | Uninduced | 29.209 |
| SRR8749031 | Uninduced | 9.240 |
| SRR8749032 | Uninduced | 13.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 83.153 |
| SRR8400027 | Control-Root | 110.278 |