Gene detail information of Glyur000227s00015142.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74875.1 | 2.00E-18 | |
| NR | XP_003613186.1 | 5.20E-98 | F-box protein [Medicago truncatula] |
| Swissprot | tr|Q9FXC7|FB79_ARATH | 1.00E-16 | Putative F-box protein At1g67623 |
| trEMBL | tr|G7K063|G7K063_MEDTR | 2.00E-98 | F-box plant-like protein {ECO:0000313|EMBL:AES96144.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00227 | 209204 | 209995 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000227s00015142.1 | PF12937.2 | F-box-like | 28 | 73 | 9.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.323 |
| SRR1783600 | control | 0.325 |
| SRR1783602 | moderate drought stress | 0.472 |
| SRR1811619 | moderate drought stress | 0.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.549 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.794 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.254 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.058 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.342 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.997 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.201 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.256 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.720 |
| SRR2967015 | Control (Tissue:root) | 4.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.534 |
| SRR9715740 | Leave | 1.446 |
| SRR9715741 | Leave | 1.169 |
| SRR9715739 | Root | 3.183 |
| SRR9715742 | Root | 6.778 |
| SRR9715743 | Root | 7.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.091 |
| SRR8749028 | MeJA induced 9h | 8.244 |
| SRR8749029 | MeJA induced 9h | 5.607 |
| SRR8749030 | Uninduced | 15.598 |
| SRR8749031 | Uninduced | 13.348 |
| SRR8749032 | Uninduced | 10.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.775 |
| SRR8400027 | Control-Root | 1.827 |