Gene detail information of Glyur000227s00015146.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22580.1 | 1.00E-159 | Exostosin family protein |
| NR | XP_003609665.1 | 0 | Xyloglucan galactosyltransferase KATAMARI1-like protein [Medicago truncatula] |
| Swissprot | tr|Q8H038|KATAM_ORYSJ | 2.00E-82 | Xyloglucan galactosyltransferase KATAMARI1 homolog |
| trEMBL | tr|G7JLG7|G7JLG7_MEDTR | 0 | Xyloglucan galactosyltransferase KATAMARI-like protein {ECO:0000313|EMBL:AES91862.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00227 | 228413 | 232696 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000227s00015146.1 | PF03016.10 | Exostosin | 41 | 391 | 3.50E-66 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.777 |
| SRR1783600 | control | 25.903 |
| SRR1783602 | moderate drought stress | 17.862 |
| SRR1811619 | moderate drought stress | 18.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.913 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.727 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.010 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.588 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.401 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.481 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.957 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.045 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.853 |
| SRR2967015 | Control (Tissue:root) | 20.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.080 |
| SRR9715740 | Leave | 6.049 |
| SRR9715741 | Leave | 5.947 |
| SRR9715739 | Root | 12.104 |
| SRR9715742 | Root | 16.250 |
| SRR9715743 | Root | 14.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.555 |
| SRR8749028 | MeJA induced 9h | 7.784 |
| SRR8749029 | MeJA induced 9h | 4.809 |
| SRR8749030 | Uninduced | 4.682 |
| SRR8749031 | Uninduced | 3.868 |
| SRR8749032 | Uninduced | 1.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.235 |
| SRR8400027 | Control-Root | 21.692 |