Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000228s00011889.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71230.1	2.00E-166	COP9-signalosome 5B
NR	XP_004501247.1	0	PREDICTED: COP9 signalosome complex subunit 5a-like [Cicer arietinum]
COG	YP_008797954.1	1.00E-11	26S proteasome regulatory subunit N11-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprot	tr\|Q9FVU9\|CSN5A_ARATH	0	COP9 signalosome complex subunit 5a
trEMBL	tr\|V7AWV1\|V7AWV1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW09108.1}

Sequence

Transcript Sequence

>Glyur000228s00011889.1
GTTAATGTTAATTTAGCTTCACTCTCGCCTCTCGGTCTCCACTCACTCCGGTGCTGCCGTTCCGAGTTCCCAGTGGTTTGGAGAGAAAGGGCGCAAAGGAAGTAGCAAAGAAGAAGAACAAGGAGAAATGGAAGGGTTGNGTTCTTCTTCGTCATCGGCGATAGCACAGCAAACATGGGAGCTGGAGAACAACATAATCCCAATGGACACCCCCGCAGACGATTCGATCTTCTACTACGACGAGGTCGGTCAGAACGAGTTCCAGCGCGAGAAGCCATGGGCTAACGACCCTCACTACTTCAAGCGCGTGAAGATCTCCGCACTCGCCCTCCTCAAGATGGTTGTCCACGCGCGCTCCGGCGGCACCATCGAGGTCATGGGCCTCATGCAGGGCAAGACCGACTCCGATTCCATCATCGTCATGGATGCCTTCGCTCTCCCCGTCGAAGGCACCGAAACCCGCGTCAATGCCCAAGCCGATGCCTACGAATACATGGTCGATTATTCCCAGACCAACAAACAGGCTGGAAGGTTGGAAAACGTTGTGGGGTGGTACCATTCTCATCCCGGTTACGGTTGTTGGCTTTCGGGGATTGATGTCTCAACGCAGATGTTGAACCAGCAATTTCAGGAACCCTTTCTTGCCGTTGTTATTGATCCAACCAGGACTGTTTCTGCTGGGAAAGTTGAGATTGGGGCTTTCAGGACTTACCCTGAAGGTTATAAGCCTCCCGATGAGCCCATTTCTGAGTATCAAACTATTCCTCTCAATAAGATTGAAGACTTTGGCGTCCATTGTAAACAGTATTATTCCTTGGATATAACTTACTTTAAGTCCTCTCTTGATTCACACCTCTTGGATCTGCTGTGGAACAAATATTGGGTGAATACCCTATCATCTTCTCCTCTATTGGGTAATGGAGACTACGTAGCTGGACAAATCTCTGATTTAGCTGAAAAGCTAGAACAGGCAGAGAATCAGTTGGCGCACTCACGTTTTGGGCCACTAATAGCACCCGCACCTAGAAAGAAAGAAGAAGAATCTCAACTTGCCAAGATCACTCGTGATAGTGCAAAAATAACAGTGGAACAAGTGCATGGTCTAATGTCACAGGTAATCAAGGACATTTTGTTCAATTCTGTTAATCAAGCAAACAGGTCTCGTGGAGAGACATCTGGCCCTGAACCAATGATTGAAAGCTGATTCTGGCATCCTATCCTCTACTAGGCTAGACGTGCATCAATACATTACTTCTCTTTTACATTCAACAGATGGACAGAGTAAATCTAGTTTTGCATTTTGTGTTGTGCTCTGTATATCCTTGTTTTATCTCTC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00228	7176	10792	-

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000228s00011889.1	PF01398.16	JAB	58	169	3.00E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	66.947
SRR1783600	control	68.054
SRR1783602	moderate drought stress	62.724
SRR1811619	moderate drought stress	61.905

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	64.678
DRR006520	Root Summer glycyrrhizin high producing strain	63.996
DRR006521	Root Winter glycyrrhizin high producing strain	48.455
DRR006522	Root Winter glycyrrhizin high producing strain	47.634
DRR006523	Root Summer glycyrrhizin low producing strain	48.557
DRR006524	Root Summer glycyrrhizin low producing strain	47.663
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.317
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.314

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	86.220
SRR2868004	Drought Stress(Tissue:root)	75.695
SRR2967015	Control (Tissue:root)	78.211

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	46.866
SRR9715740	Leave	46.918
SRR9715741	Leave	46.508
SRR9715739	Root	19.565
SRR9715742	Root	35.441
SRR9715743	Root	32.093

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	98.279
SRR8749028	MeJA induced 9h	55.382
SRR8749029	MeJA induced 9h	64.217
SRR8749030	Uninduced	32.515
SRR8749031	Uninduced	19.519
SRR8749032	Uninduced	28.506

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	53.666
SRR8400027	Control-Root	50.721