Gene detail information of Glyur000228s00011905.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G49600.10ubiquitin-specific protease 26
NRXP_003603519.10Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]
Swissprottr|Q9SCJ9|UBP26_ARATH0Ubiquitin carboxyl-terminal hydrolase 26
trEMBLtr|G7JCB7|G7JCB7_MEDTR0Ubiquitin carboxyl-terminal hydrolase {ECO:0000313|EMBL:AES73770.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002287452581961+


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0004843  thiol-dependent ubiquitin-specific protease activity

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000228s00011905.1PF00443.24UCH1073864.10E-50


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.927
SRR1783600control6.964
SRR1783602moderate drought stress9.219
SRR1811619moderate drought stress9.157

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.034
DRR006520Root Summer glycyrrhizin high producing strain18.812
DRR006521Root Winter glycyrrhizin high producing strain20.569
DRR006522Root Winter glycyrrhizin high producing strain20.143
DRR006523Root Summer glycyrrhizin low producing strain16.292
DRR006524Root Summer glycyrrhizin low producing strain16.485
DRR006525Leaf Summer glycyrrhizin high producing strain9.031
DRR006526Leaf Summer glycyrrhizin high producing strain9.012

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.411
SRR2868004Drought Stress(Tissue:root)20.427
SRR2967015Control (Tissue:root)21.535

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.615
SRR9715740Leave13.846
SRR9715741Leave15.462
SRR9715739Root2.162
SRR9715742Root11.198
SRR9715743Root9.773

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.813
SRR8749028MeJA induced 9h15.390
SRR8749029MeJA induced 9h15.856
SRR8749030Uninduced11.622
SRR8749031Uninduced13.698
SRR8749032Uninduced13.291

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.655
SRR8400027Control-Root19.885

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved