Gene detail information of Glyur000228s00011908.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G31140.10O-Glycosyl hydrolases family 17 protein
NRXP_003526446.10PREDICTED: glucan endo-1,3-beta-glucosidase 5-like [Glycine max]
Swissprottr|Q9M088|E135_ARATH0Glucan endo-1,3-beta-glucosidase 5 (Precursor)
trEMBLtr|I1K927|I1K927_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G07890.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0022898402102111+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH17,CBM43


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19893GN5_6 EC:3.2.1.39 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000228s00011908.1PF00332.13Glyco_hydro_17293473.20E-78
Glyur000228s00011908.1PF07983.8X83604301.30E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.499
SRR1783600control15.526
SRR1783602moderate drought stress10.551
SRR1811619moderate drought stress10.665

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.642
DRR006520Root Summer glycyrrhizin high producing strain16.322
DRR006521Root Winter glycyrrhizin high producing strain3.530
DRR006522Root Winter glycyrrhizin high producing strain3.420
DRR006523Root Summer glycyrrhizin low producing strain13.093
DRR006524Root Summer glycyrrhizin low producing strain13.304
DRR006525Leaf Summer glycyrrhizin high producing strain5.201
DRR006526Leaf Summer glycyrrhizin high producing strain5.064

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.268
SRR2868004Drought Stress(Tissue:root)16.389
SRR2967015Control (Tissue:root)22.996

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.765
SRR9715740Leave3.167
SRR9715741Leave4.041
SRR9715739Root12.874
SRR9715742Root15.364
SRR9715743Root13.325

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.253
SRR8749028MeJA induced 9h0.147
SRR8749029MeJA induced 9h1.070
SRR8749030Uninduced0.001
SRR8749031Uninduced0.000
SRR8749032Uninduced0.031

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.202
SRR8400027Control-Root24.782

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved