Gene detail information of Glyur000228s00011929.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G25560.12.00E-106CHY-type/CTCHY-type/RING-type Zinc finger protein
NRKHN16479.11.59E-180RING finger and CHY zinc finger domain-containing protein 1 [Glycine soja]
trEMBLtr|I1K915|I1K915_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G07800.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00228228143232163-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10144RCHY1, PIRH2 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115
Measlesmap05162


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000228s00011929.1PF05495.7zf-CHY641474.80E-16
Glyur000228s00011929.1PF13639.1zf-RING_22022459.30E-09
Glyur000228s00011929.1PF14599.1zinc_ribbon_62522873.20E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control37.375
SRR1783600control37.046
SRR1783602moderate drought stress87.006
SRR1811619moderate drought stress85.041

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain178.071
DRR006520Root Summer glycyrrhizin high producing strain175.900
DRR006521Root Winter glycyrrhizin high producing strain226.572
DRR006522Root Winter glycyrrhizin high producing strain220.410
DRR006523Root Summer glycyrrhizin low producing strain160.393
DRR006524Root Summer glycyrrhizin low producing strain160.803
DRR006525Leaf Summer glycyrrhizin high producing strain2.146
DRR006526Leaf Summer glycyrrhizin high producing strain2.463

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.593
SRR2868004Drought Stress(Tissue:root)4.598
SRR2967015Control (Tissue:root)8.493

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.769
SRR9715740Leave2.049
SRR9715741Leave0.777
SRR9715739Root32.692
SRR9715742Root34.447
SRR9715743Root37.662

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.074
SRR8749028MeJA induced 9h40.793
SRR8749029MeJA induced 9h12.628
SRR8749030Uninduced10.535
SRR8749031Uninduced1.579
SRR8749032Uninduced18.364

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.908
SRR8400027Control-Root13.639

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved