Gene detail information of Glyur000229s00018868.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43190.1 | 2.00E-78 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_003557010.1 | 0 | PREDICTED: F-box/kelch-repeat protein At5g43190-like [Glycine max] |
| Swissprot | tr|Q9FHS6|FK119_ARATH | 2.00E-111 | F-box/kelch-repeat protein At5g43190 |
| trEMBL | tr|I1J461|I1J461_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA0092S00200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00229 | 89603 | 90781 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000229s00018868.1 | PF00646.28 | F-box | 31 | 74 | 4.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.180 |
| SRR1783600 | control | 9.012 |
| SRR1783602 | moderate drought stress | 6.919 |
| SRR1811619 | moderate drought stress | 6.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.419 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.454 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.310 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.953 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.929 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.438 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.960 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.319 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.405 |
| SRR2967015 | Control (Tissue:root) | 16.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.732 |
| SRR9715740 | Leave | 4.003 |
| SRR9715741 | Leave | 4.214 |
| SRR9715739 | Root | 10.650 |
| SRR9715742 | Root | 8.802 |
| SRR9715743 | Root | 7.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.868 |
| SRR8749028 | MeJA induced 9h | 39.514 |
| SRR8749029 | MeJA induced 9h | 26.902 |
| SRR8749030 | Uninduced | 14.855 |
| SRR8749031 | Uninduced | 29.425 |
| SRR8749032 | Uninduced | 21.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 16.959 |
| SRR8400027 | Control-Root | 13.480 |