Gene detail information of Glyur000229s00018878.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G27730.13.00E-44salt tolerance zinc finger
NRNP_001235613.11.13E-100scof-1 protein [Glycine max]
Swissprottr|Q96289|ZAT10_ARATH3.00E-62Zinc finger protein ZAT10
trEMBLtr|P93166|P93166_SOYBN4.00E-101SCOF-1 {ECO:0000313|EMBL:AAB39638.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00229148904149617+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2
EAR motif-containing ProteinsC2H2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000229s00018878.1PF13912.1zf-C2H2_6881125.70E-10
Glyur000229s00018878.1PF13912.1zf-C2H2_61421661.30E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.940
SRR1783600control3.318
SRR1783602moderate drought stress2.855
SRR1811619moderate drought stress2.991

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain335.522
DRR006520Root Summer glycyrrhizin high producing strain330.745
DRR006521Root Winter glycyrrhizin high producing strain23.009
DRR006522Root Winter glycyrrhizin high producing strain19.836
DRR006523Root Summer glycyrrhizin low producing strain576.923
DRR006524Root Summer glycyrrhizin low producing strain583.285
DRR006525Leaf Summer glycyrrhizin high producing strain122.419
DRR006526Leaf Summer glycyrrhizin high producing strain122.619

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.567
SRR2868004Drought Stress(Tissue:root)202.619
SRR2967015Control (Tissue:root)599.778

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1614.631
SRR9715740Leave1535.023
SRR9715741Leave1671.242
SRR9715739Root2467.155
SRR9715742Root2272.267
SRR9715743Root2133.749

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h992.900
SRR8749028MeJA induced 9h710.340
SRR8749029MeJA induced 9h806.195
SRR8749030Uninduced633.113
SRR8749031Uninduced166.171
SRR8749032Uninduced767.100

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root102.546
SRR8400027Control-Root134.964

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved