Gene detail information of Glyur000230s00016876.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19790.1 | 6.00E-21 | related to AP2 11 |
| NR | ABK28850.1 | 8.19E-69 | transcription factor ERF [Medicago truncatula] |
| Swissprot | tr|Q6J9S1|RA211_ARATH | 7.00E-40 | Ethylene-responsive transcription factor RAP2-11 |
| trEMBL | tr|A2Q5W1|A2Q5W1_MEDTR | 3.00E-69 | Transcription factor ERF {ECO:0000313|EMBL:ABK28850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00230 | 54423 | 55606 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000230s00016876.1 | PF00847.15 | AP2 | 45 | 94 | 4.70E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.121 |
| SRR1783600 | control | 0.158 |
| SRR1783602 | moderate drought stress | 0.349 |
| SRR1811619 | moderate drought stress | 0.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.096 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.242 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.138 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.596 |
| SRR2967015 | Control (Tissue:root) | 7.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.131 |
| SRR9715740 | Leave | 0.020 |
| SRR9715741 | Leave | 0.183 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.190 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 1.796 |
| SRR8749031 | Uninduced | 0.820 |
| SRR8749032 | Uninduced | 0.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.587 |
| SRR8400027 | Control-Root | 0.753 |