Gene detail information of Glyur000231s00022061.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT4G15560.1 | 0 | Deoxyxylulose-5-phosphate synthase |
NR | XP_003550669.1 | 0 | PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic-like [Glycine max] |
COG | YP_002289869.1 | 0 | 1-deoxy-D-xylulose-5-phosphate synthase [Oligotropha carboxidovorans OM5] |
Swissprot | tr|Q6YU51|DXS2_ORYSJ | 0 | Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (Precursor) |
trEMBL | tr|I1MSU3|I1MSU3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G07400.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00231 | 8828 | 13450 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01662 | dxs | EC:2.2.1.7 | Thiamine metabolism | map00730 |
Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000231s00022061.1 | PF13292.1 | DXP_synthase_N | 70 | 355 | 1.10E-107 |
Glyur000231s00022061.1 | PF02779.19 | Transket_pyr | 437 | 497 | 3.10E-12 |
Glyur000231s00022061.1 | PF02780.15 | Transketolase_C | 515 | 604 | 1.90E-26 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.169 |
SRR1783600 | control | 0.145 |
SRR1783602 | moderate drought stress | 0.250 |
SRR1811619 | moderate drought stress | 0.266 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 14.460 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 14.491 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 1.082 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 1.048 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.441 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.484 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.467 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.457 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 5.096 |
SRR2868004 | Drought Stress(Tissue:root) | 10.297 |
SRR2967015 | Control (Tissue:root) | 11.845 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 27.418 |
SRR9715740 | Leave | 3.875 |
SRR9715741 | Leave | 34.254 |
SRR9715739 | Root | 3.936 |
SRR9715742 | Root | 13.318 |
SRR9715743 | Root | 11.882 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 2.058 |
SRR8749028 | MeJA induced 9h | 1.656 |
SRR8749029 | MeJA induced 9h | 1.627 |
SRR8749030 | Uninduced | 1.731 |
SRR8749031 | Uninduced | 1.336 |
SRR8749032 | Uninduced | 3.392 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 22.585 |
SRR8400027 | Control-Root | 2.222 |