Gene detail information of Glyur000231s00022061.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G15560.10Deoxyxylulose-5-phosphate synthase
NRXP_003550669.10PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic-like [Glycine max]
COGYP_002289869.101-deoxy-D-xylulose-5-phosphate synthase [Oligotropha carboxidovorans OM5]
Swissprottr|Q6YU51|DXS2_ORYSJ0Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (Precursor)
trEMBLtr|I1MSU3|I1MSU3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G07400.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00231882813450+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01662dxs EC:2.2.1.7 Thiamine metabolism map00730
Terpenoid backbone biosynthesismap00900


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0016114  terpenoid biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008661  1-deoxy-D-xylulose-5-phosphate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000231s00022061.1PF13292.1DXP_synthase_N703551.10E-107
Glyur000231s00022061.1PF02779.19Transket_pyr4374973.10E-12
Glyur000231s00022061.1PF02780.15Transketolase_C5156041.90E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.169
SRR1783600control0.145
SRR1783602moderate drought stress0.250
SRR1811619moderate drought stress0.266

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.460
DRR006520Root Summer glycyrrhizin high producing strain14.491
DRR006521Root Winter glycyrrhizin high producing strain1.082
DRR006522Root Winter glycyrrhizin high producing strain1.048
DRR006523Root Summer glycyrrhizin low producing strain0.441
DRR006524Root Summer glycyrrhizin low producing strain0.484
DRR006525Leaf Summer glycyrrhizin high producing strain0.467
DRR006526Leaf Summer glycyrrhizin high producing strain0.457

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.096
SRR2868004Drought Stress(Tissue:root)10.297
SRR2967015Control (Tissue:root)11.845

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.418
SRR9715740Leave3.875
SRR9715741Leave34.254
SRR9715739Root3.936
SRR9715742Root13.318
SRR9715743Root11.882

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.058
SRR8749028MeJA induced 9h1.656
SRR8749029MeJA induced 9h1.627
SRR8749030Uninduced1.731
SRR8749031Uninduced1.336
SRR8749032Uninduced3.392

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.585
SRR8400027Control-Root2.222