Gene detail

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Gene detail information of Glyur000231s00022061.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G15560.1	Deoxyxylulose-5-phosphate synthase
NR	XP_003550669.1	PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic-like [Glycine max]
COG	YP_002289869.1	1-deoxy-D-xylulose-5-phosphate synthase [Oligotropha carboxidovorans OM5]
Swissprot	tr\|Q6YU51\|DXS2_ORYSJ	Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (Precursor)
trEMBL	tr\|I1MSU3\|I1MSU3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G07400.1}

Sequence

Transcript Sequence

>Glyur000231s00022061.1
CCGCCTTACACAAACAGTCATCATCAACCTCAAAGAGCGTGCATGTTGTGTTGTGTTGGGCCTAGTTAGTTAGTTATATTTTCTCTTCTCAACACAAGATTGGCCTCACTTCTTCCTTAATTTTACCAATTAAAGGACCAAACCAGCTTAATCGNCATGGCTTCCTTTGTTCTTGGAACNAGTTTCCTTCCTCTGTTTCATTCTCAAGAGTACAAGTNCTGCGGCCTCCCAAGTATCTCAAACACATTAACCACCAAAATCTCAGCTTCTCGAGGAGACAATGTTGGTGAGAAACGCTACGAAACAAATCAACAGTTGCGGAGATCTTTGAATTTCTCAGGAGATAAGCCATCCACCCCAATTTTGGACACAATAAATTACCCAATCCACATGAAGAATCTATCCTTTCAGGAACTTGAGGCGCTAGCTGATGAACTCCGTGAAGAGATTGTTTATACGGTGTCAAAGACNGGGGGACATTTAAGTTCAAGCCTAGGTGTGGCTGAGTTAACGGTGGCACTTCACCATGTATTCAACACTCCTCAAGACAAGATCATTTGGGATGTTGGTCATCAGACCTATGCTCACAAGATATTAACNGGAAGAAGATCGAAAATGCACACAATTCGACAGACCGGTGGACTTGCAGGATTTCCCAAGAGGGATGAGAGCGTTCATGATGCCTTTGGAGTTGGTCATAGTTCTACTAGCATTTCAGCTGCCTTAGGGATGGCAGTTGCAAGAGACATGANTGGAAAAGACAACCATGTGGTTTCCGTGATCGGTGACGGGGCCATGACGGCTGGACAAGCGTACGAAGCAATGAACAACGCTGGTTTCCTCGATACCAATCTTATTGTCATCTTAAACGACAACAAACAAGTTTCTCTTCCCACCGCAACCATCGATGGCCCAGTTCCACCGGTTGGAGCTCTCAGTAGAGCACTCGCCAGGCTACAAACCACTCCTAAGTTCCATCAATTACGTCAGGCCGCAAAGGGCATGACGAAACANATTGGAAGCCAAGCACATGAATTTGCGGCTAAATTGGATTCGTACATGAGAGGGATGGTAGGTGGTTCTGGTGCTTGTTTTTTCGAAGAGCTTGGGCTCTTCTATATTGGCCCCGTAGATGGTCATAGTATCGAAGACCTTGTGTACATCCTGAAAAATGTCAAAGCCATGCCAACACGAGGACCNGTTCTCATTCATGCTATTACTGAGAAAGGAAAGGGCTATCATCCNGCTGAAACTGCACCTGACAAGATGCACGGTGTTGTGAAGTTTGATCCCAAGTCAGGGAAGCAGTTGAAATCCAAAACAACTACGCGGTCTTACACTCAGTACTTTGCAGAGTCTTTGACGGCAGAGGCAGAGGCTGATGACAGAATTGTTGCCATCCACGCTGCAATGGGAGGTGGCACTGGCCTTAACTTTTTCCAAAAACGCTTCCCAGAGAGATACAGAGCTGGCCTAGTTGGTGCTGATGGACCAACTCACTGTGGAGCCTTTGACACAACATTCATGGCTTGTTTGCCAAACATGGTGGTTATGGCTCCCTCAGATGAGACTGAACTGATGCACATGGTAGCCACTGCTGCAGCAATAGATGACAGGCCTAGTTGCTTTAGGTACCCAAGAGGGAATGGTATAGGATCCATTCTCCCACCTAACAATAAAGGCATTCCACTGGAGGTTGGTAAAGGAAGGGTATTAAAGGAGGGAAGCAGGGTTGCTCTTGTTGGCTATGGAACAATGGTACAAAGCTGTATGGAAGCAGCTAAGGTTCTTGAAGCTCATGGCATCTCAACAACTGTGGTTGATGCACGATTTTGTAAGCCTCTCGATNGAGATTTGATGAGGCAACTTGCTAGAGAGCATGAAATTCTTATCACGGTTGAAGAGGGATCTATTGGAGGATTTGGTTCTCACTGGCGAGCCATGACGCTACCTGACAGATACATCGACCATGGATCTCAGATAGATCAAATTGAAGTAGCGGGACTCAGCTCAAAACATGTCGCAGCTACTGCNTTGTCATTAACAAATGTGCAATGGGACAGTCGTCAGCTTCTCAGCCTGCAGATATNAATCTTAATGGGAGTTCTGAGCCCNGTGATTCAATTTTAGGTGTCCCCTTACTACATGATACTGTACATAAATTGCATTNTATCACCAAAAGTATAGCAACAATGCAATTACAAAAGCGTTGGTGTGATGAAATTCTACATCCTCTGTCACTGGGGAGTGTAATTAATAAGCATTTAAATTAACCACGTGCATAAGGAGGGAGATAAAAGAGGAAAGGTCAGGGGAGCAATTGTACTTGTAATTAAAATATGTTTTGTATAATTATGGAAACTAGTATGAAATGAAGTTTTGGGCCTGACGAATTCACACAGGGGTGTCAAGTTTTTCACAGCTGTGAACTGCTCTGGATTGTACTGGGCATTTTCGCACTTGGATCTGACACCTTTACACCAAGGGTGGAAATTTCTACACAATTGTGAATATCTCTGGACTACTCCGGAATTTCGCACTGGAGACTTCACACTGGTGGTGGGAATTTCTTCACAGGTGTGAACTGCTCTAGACCATACTATGTACTCTCGCACTTGGGTCTGACGCCTTTACNCTGGGGGTGGGATTTCTCTCACAATGGTGAATGGTTCTGATTTTGCTTGTTGNGNTGAATTTATTAGTTTGTCTTTTTTGTGGTATTTTTTTGACATGCCGCAAATTATAGATATGGTTTGAGGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00231	8828	13450	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01662	dxs	EC:2.2.1.7	Thiamine metabolism	map00730
K01662	dxs	EC:2.2.1.7	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0016114 terpenoid biosynthetic process

molecular_function GO:0003824 catalytic activity GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000231s00022061.1	PF13292.1	DXP_synthase_N	70	355	1.10E-107
Glyur000231s00022061.1	PF02779.19	Transket_pyr	437	497	3.10E-12
Glyur000231s00022061.1	PF02780.15	Transketolase_C	515	604	1.90E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.169
SRR1783600	control	0.145
SRR1783602	moderate drought stress	0.250
SRR1811619	moderate drought stress	0.266

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.460
DRR006520	Root Summer glycyrrhizin high producing strain	14.491
DRR006521	Root Winter glycyrrhizin high producing strain	1.082
DRR006522	Root Winter glycyrrhizin high producing strain	1.048
DRR006523	Root Summer glycyrrhizin low producing strain	0.441
DRR006524	Root Summer glycyrrhizin low producing strain	0.484
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.467
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.457

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	5.096
SRR2868004	Drought Stress(Tissue:root)	10.297
SRR2967015	Control (Tissue:root)	11.845

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	27.418
SRR9715740	Leave	3.875
SRR9715741	Leave	34.254
SRR9715739	Root	3.936
SRR9715742	Root	13.318
SRR9715743	Root	11.882

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.058
SRR8749028	MeJA induced 9h	1.656
SRR8749029	MeJA induced 9h	1.627
SRR8749030	Uninduced	1.731
SRR8749031	Uninduced	1.336
SRR8749032	Uninduced	3.392

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	22.585
SRR8400027	Control-Root	2.222