Gene detail information of Glyur000231s00022063.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G57660.15.00E-88CONSTANS-like 5
NRXP_004507812.10PREDICTED: zinc finger protein CONSTANS-LIKE 5-like isoform X1 [Cicer arietinum]
Swissprottr|Q9FHH8|COL5_ARATH2.00E-119Zinc finger protein CONSTANS-LIKE 5
trEMBLtr|V7C9I6|V7C9I6_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW26794.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002312361825373+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-CO-like


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005622  intracellular


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000231s00022063.1PF00643.19zf-B_box631088.70E-07
Glyur000231s00022063.1PF06203.9CCT2903331.10E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.437
SRR1783600control11.453
SRR1783602moderate drought stress14.740
SRR1811619moderate drought stress14.941

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain28.973
DRR006520Root Summer glycyrrhizin high producing strain28.788
DRR006521Root Winter glycyrrhizin high producing strain18.212
DRR006522Root Winter glycyrrhizin high producing strain17.222
DRR006523Root Summer glycyrrhizin low producing strain61.407
DRR006524Root Summer glycyrrhizin low producing strain62.186
DRR006525Leaf Summer glycyrrhizin high producing strain126.535
DRR006526Leaf Summer glycyrrhizin high producing strain142.291

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)85.066
SRR2868004Drought Stress(Tissue:root)153.171
SRR2967015Control (Tissue:root)119.982

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave232.764
SRR9715740Leave232.313
SRR9715741Leave224.488
SRR9715739Root188.413
SRR9715742Root192.956
SRR9715743Root188.425

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h36.034
SRR8749028MeJA induced 9h58.649
SRR8749029MeJA induced 9h36.457
SRR8749030Uninduced61.907
SRR8749031Uninduced12.604
SRR8749032Uninduced37.852

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.402
SRR8400027Control-Root32.589

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved