Gene detail

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Gene detail information of Glyur000231s00022065.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57670.2	0	Protein kinase superfamily protein
NR	XP_006593554.1	0	PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670-like isoform X2 [Glycine max]
COG	YP_007779934.1	1.00E-23	Serine/threonine protein kinase [Roseburia intestinalis XB6B4]
Swissprot	tr\|Q5XF57\|Y5576_ARATH	0	Probable receptor-like serine/threonine-protein kinase At5g57670
trEMBL	tr\|K7LWW8\|K7LWW8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G01300.2}

Sequence

Transcript Sequence

>Glyur000231s00022065.1
ATGGTACTTCCTTCCCCTTCTAAAATACTAATTGGCCTTTCCTTAGACCCAGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTCTAGCCAATCCAAATGATACCATTGTTGCCGTCCATGTTCTTGTTGCTGAGGATAAGAAGAAGCGTGTCTCAGTCAGAAGAAGGCAATCACAACTTCGGCAGGCAAAAGCATACGTTATATCTGTGCTTGGAGAATTCGCACAGACCTGTTGCTCTAAGCAGGTTAATTTGGAGGCGAAAGTGGCACTCAATTCCACAGTAGGTAGAGGTTTAGTGGAGGAAGCCAAGTCCATCTCTGCTGACTTTCTTCTTCTTCGTGGCTCAAGAAACCAAAAAAATAAATTTGGAACCTCTAAAGGAATTACCAAGTATTGCTTTGAGCATGCACATGAAGGCTGTACGATGGTCTCAGTTGGGAGGTGTAAAAAGGCAGATCAAAATGCCAATTCATCAAATTCAACACATTTTCAAGATAATAATCGTCAACCAAATTCAAGAAGGTTTAAGAAGGATAACTTCGTTGACAAGGCTAACTCCCCTGTTCTGGAGGATTTTATCTCAGAAACAAAGGCACAGAACAGTTCACCAAGAACGGTACTAGATGCACTGGAGGGACAATCGAACAGTACAGAAGATGACACCTTTAGCACTAGGGTCTCAAGCATCACATNTACCCCTTCATCGGGTCCCAAGATTAAGGGCCAATCCAAGTTAAGGAAAACACAGTTTTCATTCAGGTTCATAATATCTTTCCTTGGCTCACCATTCAGAAGAAAAAACTTCAACATGTCCAGAAATGAAAAGGGTCAGCCCTTGTTGAAGTGCTTCAGCTATGAAAAGATANCCAATGCTACTAATGATTTTCACCAAGATAATTTGGTTGGACGAGGAGGGTACTCGGAAGTATACAAAGGTGATCTTTGTGATGGACGAACCATTGCTGTGAAGAGGTTGGCAAAGGACAACAAGGATCCAAACAAGGAAAAAGAGTTCCTTATGGAGTTGGGTGTTATTGGACATGTCTGCCATCCTAATACTGCAACTTTAGTGGGCTATTGCATTGAAAATGGGCTCTATCTGATTTTCAATTACTCTCAAAATGGAAACTTGGCAACTGCATTGCATGGTAAAGCAGGAAATTCACTTGACTGGCCAATCAGATACAAAATTGCTATTGGAGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAGCACCGAATAATTCATCGTGACATTAAAGCCTCCAATGTTCTTCTGGGTCCTGACTATGAACCACAGATTACCGATTTTGGACTTGCAAAGTGGCTTCCTAACAANTGGACTCACCATGCTGTAATCCCTGTGGAGGGCACATTTGGATACTTGGCACCAGAGTACTTTATGCATGGTATTGTGGATGAGAAAACAGATGTTTTCGCATTTGGTGTTCTTCTTCTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCAAAGCAAAACCTTCTCCTATGGGCAAAGCCTCTCATGGAATCAGGGAATATTGCTGAGCTGGCTGATCCAAGATTGGAAGGTAGATATGATGAAGAGCAACTGTATAGGGTAGTGCTAACTGCTTCATACTGTGTGAGACAAACTGACATTTGGCGTCCCCCAATGAGCGAGGTGTTGGAGCTGCTAACTAGTGGCCAAGACTGTGAAGTTGGAAAGAGCTGGAGGATCCCAAAGTTCACTTCTGATGAATTGGATGATTACTCCATGGTTTTTGGATATGATGTCCCCTCAGACATATCTCTGGAGGATTATTTGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00231	30998	34195	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.10.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0006950 response to stress

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000231s00022065.1	PF00582.21	Usp	8	140	1.40E-06
Glyur000231s00022065.1	PF00069.20	Pkinase	299	505	3.70E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.590
SRR1783600	control	1.606
SRR1783602	moderate drought stress	0.679
SRR1811619	moderate drought stress	0.611

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.133
DRR006520	Root Summer glycyrrhizin high producing strain	2.155
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.421
DRR006524	Root Summer glycyrrhizin low producing strain	0.423
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.999
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.676

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.901
SRR2868004	Drought Stress(Tissue:root)	5.177
SRR2967015	Control (Tissue:root)	6.054

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.956
SRR9715740	Leave	6.330
SRR9715741	Leave	10.697
SRR9715739	Root	0.170
SRR9715742	Root	1.578
SRR9715743	Root	1.288

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.023
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.018
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.042
SRR8749032	Uninduced	0.046

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	7.012
SRR8400027	Control-Root	11.744