Gene detail information of Glyur000231s00022073.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57700.3 | 5.00E-139 | BNR/Asp-box repeat family protein |
| NR | XP_003542289.1 | 0 | PREDICTED: uncharacterized protein LOC100779946 [Glycine max] |
| COG | YP_825850.1 | 6.00E-84 | hypothetical protein Acid_4606 [Candidatus Solibacter usitatus Ellin6076] |
| trEMBL | tr|K7LWX4|K7LWX4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G01390.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00231 | 97201 | 105874 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH33 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000231s00022073.1 | PF13088.1 | BNR_2 | 38 | 304 | 2.00E-88 |
| Glyur000231s00022073.1 | PF13088.1 | BNR_2 | 418 | 684 | 3.70E-87 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.080 |
| SRR1783600 | control | 5.161 |
| SRR1783602 | moderate drought stress | 3.753 |
| SRR1811619 | moderate drought stress | 3.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.218 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.180 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.613 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.611 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.108 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.472 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.142 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.773 |
| SRR2967015 | Control (Tissue:root) | 10.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.179 |
| SRR9715740 | Leave | 2.720 |
| SRR9715741 | Leave | 2.584 |
| SRR9715739 | Root | 2.102 |
| SRR9715742 | Root | 3.203 |
| SRR9715743 | Root | 2.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.530 |
| SRR8749028 | MeJA induced 9h | 4.392 |
| SRR8749029 | MeJA induced 9h | 5.255 |
| SRR8749030 | Uninduced | 2.831 |
| SRR8749031 | Uninduced | 1.064 |
| SRR8749032 | Uninduced | 1.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.412 |
| SRR8400027 | Control-Root | 10.451 |