Gene detail information of Glyur000231s00022085.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G18670.12.00E-21RING/U-box superfamily protein
NRXP_003610228.11.72E-56RING finger-like protein [Medicago truncatula]
Swissprottr|Q9ZV51|ATL56_ARATH2.00E-29RING-H2 finger protein ATL56
trEMBLtr|G7JEB1|G7JEB1_MEDTR6.00E-57Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES92425.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00231210398210955-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000231s00022085.1PF13639.1zf-RING_21091522.20E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control96.734
SRR1783600control85.252
SRR1783602moderate drought stress149.781
SRR1811619moderate drought stress135.408

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain91.533
DRR006520Root Summer glycyrrhizin high producing strain90.961
DRR006521Root Winter glycyrrhizin high producing strain253.618
DRR006522Root Winter glycyrrhizin high producing strain235.004
DRR006523Root Summer glycyrrhizin low producing strain84.946
DRR006524Root Summer glycyrrhizin low producing strain81.387
DRR006525Leaf Summer glycyrrhizin high producing strain11.445
DRR006526Leaf Summer glycyrrhizin high producing strain11.084

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.912
SRR2868004Drought Stress(Tissue:root)26.546
SRR2967015Control (Tissue:root)38.700

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.035
SRR9715740Leave14.835
SRR9715741Leave22.824
SRR9715739Root62.321
SRR9715742Root55.784
SRR9715743Root45.882

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h104.257
SRR8749028MeJA induced 9h132.381
SRR8749029MeJA induced 9h134.442
SRR8749030Uninduced47.581
SRR8749031Uninduced63.942
SRR8749032Uninduced129.838

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.258
SRR8400027Control-Root43.734

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved