Gene detail information of Glyur000231s00022086.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30400.1 | 4.00E-86 | RING/U-box superfamily protein |
| NR | XP_007154824.1 | 0 | hypothetical protein PHAVU_003G150800g [Phaseolus vulgaris] |
| Swissprot | tr|Q940Q4|ATL13_ARATH | 6.00E-118 | RING-H2 finger protein ATL13 |
| trEMBL | tr|V7CBT9|V7CBT9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW26818.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00231 | 220926 | 222512 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000231s00022086.1 | PF13639.1 | zf-RING_2 | 136 | 179 | 1.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.419 |
| SRR1783600 | control | 0.501 |
| SRR1783602 | moderate drought stress | 0.304 |
| SRR1811619 | moderate drought stress | 0.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.205 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.270 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.209 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.259 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.305 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.694 |
| SRR2967015 | Control (Tissue:root) | 3.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.765 |
| SRR9715740 | Leave | 1.642 |
| SRR9715741 | Leave | 2.100 |
| SRR9715739 | Root | 1.284 |
| SRR9715742 | Root | 1.810 |
| SRR9715743 | Root | 1.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.868 |
| SRR8749028 | MeJA induced 9h | 1.969 |
| SRR8749029 | MeJA induced 9h | 0.420 |
| SRR8749030 | Uninduced | 1.746 |
| SRR8749031 | Uninduced | 0.256 |
| SRR8749032 | Uninduced | 0.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.164 |
| SRR8400027 | Control-Root | 5.631 |