Gene detail information of Glyur000232s00013749.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G75950.13.00E-50S phase kinase-associated protein 1
NRXP_004512164.11.31E-75PREDICTED: SKP1-like protein 1A-like [Cicer arietinum]
Swissprottr|Q39255|SKP1A_ARATH5.00E-63SKP1-like protein 1A
trEMBLtr|I3SWX0|I3SWX0_LOTJA7.00E-75Uncharacterized protein {ECO:0000313|EMBL:AFK44762.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002323055437734-


Gene family

Gene familysubfamily
Ubiquitin FamilySKP1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000232s00013749.2PF03931.10Skp1_POZ5645.20E-30
Glyur000232s00013749.2PF01466.14Skp1781557.00E-43


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control222.559
SRR1783600control220.505
SRR1783602moderate drought stress187.981
SRR1811619moderate drought stress180.590

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain530.427
DRR006520Root Summer glycyrrhizin high producing strain518.228
DRR006521Root Winter glycyrrhizin high producing strain678.636
DRR006522Root Winter glycyrrhizin high producing strain691.268
DRR006523Root Summer glycyrrhizin low producing strain473.387
DRR006524Root Summer glycyrrhizin low producing strain459.008
DRR006525Leaf Summer glycyrrhizin high producing strain214.486
DRR006526Leaf Summer glycyrrhizin high producing strain221.896

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)669.025
SRR2868004Drought Stress(Tissue:root)768.025
SRR2967015Control (Tissue:root)744.076

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave398.543
SRR9715740Leave402.339
SRR9715741Leave443.086
SRR9715739Root349.839
SRR9715742Root344.515
SRR9715743Root250.331

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h848.729
SRR8749028MeJA induced 9h691.490
SRR8749029MeJA induced 9h905.040
SRR8749030Uninduced804.578
SRR8749031Uninduced832.023
SRR8749032Uninduced971.188

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root620.485
SRR8400027Control-Root621.063

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved