Gene detail information of Glyur000232s00013757.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G66120.22.00E-1803-dehydroquinate synthase, putative
NRXP_004512152.10PREDICTED: 3-dehydroquinate synthase-like [Cicer arietinum]
COGYP_392398.12.00E-1553-dehydroquinate synthase [Thiomicrospira crunogena XCL-2]
Swissprottr|U3KRF2|DHQS_ACTCH03-dehydroquinate synthase, chloroplastic (Precursor)
trEMBLtr|G7JXJ9|G7JXJ9_MEDTR03-dehydroquinate synthase {ECO:0000313|EMBL:AES95170.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002327759981014-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01735aroB EC:4.2.3.4 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0009073  aromatic amino acid family biosynthetic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003856  3-dehydroquinate synthase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000232s00013757.1PF01761.15DHQ_synthase1544121.70E-105


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control63.186
SRR1783600control63.335
SRR1783602moderate drought stress47.407
SRR1811619moderate drought stress47.055

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain61.426
DRR006520Root Summer glycyrrhizin high producing strain60.727
DRR006521Root Winter glycyrrhizin high producing strain19.171
DRR006522Root Winter glycyrrhizin high producing strain18.817
DRR006523Root Summer glycyrrhizin low producing strain43.730
DRR006524Root Summer glycyrrhizin low producing strain43.758
DRR006525Leaf Summer glycyrrhizin high producing strain46.648
DRR006526Leaf Summer glycyrrhizin high producing strain46.305

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)112.750
SRR2868004Drought Stress(Tissue:root)101.899
SRR2967015Control (Tissue:root)88.402

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave54.953
SRR9715740Leave64.675
SRR9715741Leave57.662
SRR9715739Root58.580
SRR9715742Root74.932
SRR9715743Root71.921

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.734
SRR8749028MeJA induced 9h41.208
SRR8749029MeJA induced 9h22.585
SRR8749030Uninduced35.782
SRR8749031Uninduced20.432
SRR8749032Uninduced16.114

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root97.911
SRR8400027Control-Root97.972

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved