Gene detail

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Gene detail information of Glyur000232s00013771.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66190.1	2.00E-167	ferredoxin-NADP(+)-oxidoreductase 1
NR	XP_003520228.1	0	PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like isoform 1 [Glycine max]
COG	YP_007102662.1	2.00E-132	ferredoxin--NADP(+) reductase [Pseudanabaena sp. PCC 7367]
Swissprot	tr\|P10933\|FENR1_PEA	0	Ferredoxin--NADP reductase, leaf isozyme, chloroplastic (Precursor)
trEMBL	tr\|I1JCG8\|I1JCG8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G05350.1}

Sequence

Transcript Sequence

>Glyur000232s00013771.1
CTTAAAAATCTCATCCACTCAATCTTAAAATCCCCTGTGCAACCAGAAAAAACGATCAAACACTCCTCGTTCTATTCTCTTCAGACTTCACTGCATATACATATCATCACCTCATTTAACATTACTCTCTCTTTCTCCATCTTCCTGTTTTCTACAACAACATGGCTGCTGCTTTAACTGCTGCAGTCTCCTTTCCATCCTCCAAGTCCNCCTCTCTTCCAAGCAGGACCTCTGTCTTTGCCCCAGAGAGAGTAGTCCTCANGAAGGTTTCATTGCAATACAGAGATATTTCTATCAGTGGAAGGGTAGGTTCCATCAGAGCCCAAGTCACCACAGAGGCACCTGCTAAGGTAGAAAAGGTATCCAAGAAACAGGACGAAGGTGTGGTTGTGAACAAGTTCAAACCCAAGGAACCATACATTGGCAGGTGTCTTCTCAACACAAAGATCACTGGGGATGATGCACCTGGAGAAACTTGGCACATGGTCTTCAGCACTGAGGGAGAGGTTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTATTGACAAGAATGGCAAGCCTCACAAGCTGAGATTGTATTCAATTGCTAGCAGTGCTCTTGGTGATTTTGGAGACTCCAAAACTGTTTCACTATGCGTGAAACGTCTTGTGTATACAAACGAAAACGGAGAGCTTGTCAAGGGAGTCTGCTCAAATTTCTTGTGCGACTTGAAGCCAGGAGCTGAAGTAAAGATTACTGGACCTGTTGGTAAAGAAATGCTTATGCCAAANGATCCTAATGCCACCATCATCATGTTGGCAACTGGAACTGGAATTGCCCCATTCCGCTCATTTTTATGGAAAATGTTCTTCGAGAAGCATGACGATTACAAGTTCAATGGTTTGGCATGGCTTTTCTTGGGTGTCCCCACAAGCAGCTCACTGCTTTATAAGGAGGAATTTGAGAAGATGAAGGAGAAAGNACCTGAGAACTTCAGGCTTGACTTTGCTGTGAGCAGAGAGCAAACAAACGAGAAAGGAGAGAAGATGTACATCCAAACCAGAATGGCTCAATATGCAGAAGAGCTGTGGGAATTGCTGAAGAAAGACAACACTTTTGTCTACATGTGTGGACTCAAAGGGATGGAAAAGGGGATTGATGACATAATGGTGTCATTGGCTGCCAAAGATGGTATCGATTGGGCTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGAATGTCGAAGTCTATTAATTTCTGTTCTGTTGTTCACTTGCACAGATATCATATCAAGTCCCCACTTTGTGCAGCAGCGAGGATATCTAATTATCTATCATGCTCCTGCATTCTGTAGATAGAGTACACTATAGATTTTGCTATGATGAGAATTTTAAACTTTGCTCATGAACAANCATCATTACAAACAGCCCTTGCAAGAAATAATTTTGAGGATCATGCAATATAGATGAAGCCAACTTCATTTTATTGATATATTTCCTGAAAAAACAAATTATATTTAACAGTAAAATTAAACCATGTGAAACTTAATTAATGTCGTAGAATATTTAGATAATTGAGCATACCTTTTTCTTTTGGCTGAAACCATGACCACATTGGGTGCAANCTGTATGTCCCACTGCATAACGTTTGGGGGACCTTATATGTTACTTGTTTGCTTAGGTCTTGAAAACTGATAAATGCTACTTGCACATCACTACCAGCTGATTCATTAATTACCTCATGAATAGGAATGAGGTATGAGACAGAATCACAATTTATTCTCGATACAGATATGAATATAATATGTGTTAACTTGATGAACTGTTTTCTACTTGTGTGATACACTTCTGAGCAAGAAGTCAAGCAAGTTGTCAAAATAATTGAAGATGAGAAATTTCTTTTTGTTATCTTAAACATAGGATCAGGTCTCGGTACTACAAGTTTGTCTGGTACCTTTGGTTTAANTTTTAGGTGTGGGCAGTGGTCGAATATTTCGGCTATTCAGAGTGAGGTGATGTTATCACTTATCTCACAGTCGCATCCCCCAGGCGCTGCAAGGGCCA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00232	168678	172671	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02641	petH	EC:1.18.1.2	Photosynthesis	map00195

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000232s00013771.1	PF00970.19	FAD_binding_6	138	201	8.00E-05
Glyur000232s00013771.1	PF00175.16	NAD_binding_1	215	330	1.20E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.181
SRR1783600	control	0.166
SRR1783602	moderate drought stress	1.751
SRR1811619	moderate drought stress	1.802

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.079
DRR006520	Root Summer glycyrrhizin high producing strain	0.138
DRR006521	Root Winter glycyrrhizin high producing strain	0.643
DRR006522	Root Winter glycyrrhizin high producing strain	0.572
DRR006523	Root Summer glycyrrhizin low producing strain	0.737
DRR006524	Root Summer glycyrrhizin low producing strain	0.457
DRR006525	Leaf Summer glycyrrhizin high producing strain	134.171
DRR006526	Leaf Summer glycyrrhizin high producing strain	133.349

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.947
SRR2868004	Drought Stress(Tissue:root)	4.195
SRR2967015	Control (Tissue:root)	1.333

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	91.042
SRR9715740	Leave	152.374
SRR9715741	Leave	96.529
SRR9715739	Root	0.024
SRR9715742	Root	0.681
SRR9715743	Root	0.297

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.533
SRR8749028	MeJA induced 9h	2.893
SRR8749029	MeJA induced 9h	3.620
SRR8749030	Uninduced	0.620
SRR8749031	Uninduced	1.214
SRR8749032	Uninduced	0.617

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.947
SRR8400027	Control-Root	3.599