Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000234s00015068.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20140.1	0	Leucine-rich repeat transmembrane protein kinase
NR	XP_003524132.2	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max]
COG	YP_004775215.1	1.00E-60	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	0	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|I1K390\|I1K390_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G26520.1}

Sequence

Transcript Sequence

>Glyur000234s00015068.1
ATGAGGATTTCAACACTTGCAGTTGTTATTCTTCTTGTGTGCTTTTCTTCTATGCCACTAGTCCTTGGCCAGGGCAACTTCAATGAGACAACTTTGAGAGTGCTTTTGGAAGTGAAGAAGTCCTTTGTGCAAGACCCACAAAATGTTTTGAGTGGTTGGTCAGAGGACAACACAAACTACTGCAGTTGGAGAGGGGTGTCATGTGGATTGAACTCTTTGGATGATAACTCTGTGCATGTGGTGGGCCTCAACCTTTCTGACTCGTCACTCACTGGGTCAATTTCACCTTCACTCGGTCATTTGCAAAACCTGCTCCACCTTGATCTCTCCTCCAATAGCCTCACGGGTCTCATTCCACCAAATCTCTCTAACCTTGTTTCCTTGGAATCTTTGCTTCTCTTCTCTAACCAACTCACGGGTCCTGTTCCCACTGAGCTTGGCTCACTCACGAGTCTCCGAGTCATGCGACTCGGTGACAATGAACTAACGGGTATGATTCCCACGTCTCTTGGGAACTTGTTTAACTTGGTCAATCTTGGCCTTGCTTCCTGTCAACTGACCGGGTCAATTCCACCTGAACTCGGGCAACTCAGTCTCATGGAGAATCTGATTCTACAGGATAACGAGCTGATGGGTCCAATTCCGTCTGAGTTGGGGAACTGCTCAAGCCTCGTCATCTTCACTGCTACCAACAACAAACTCAATGGCTCAATTCCGAGTGAACTGGGTCAACTCAAGAATGCACAAATTCTCAACCTTGCCAACAACAGTCTATCCGGGGAGATTCCGAGTCAACTCGGGGAAATGAGTGAGCTCATTTACCTGAATTTAATGGGGAACCAGCTTGAGGGTGCTATTCCACTGTCTCTGGCTCAATTGGGTAATCTTCAAAATCTGGACTTGTCCATGAACAAGCTCAGTGGAGGAATTCCAGAGGAGTTGGGCAACATGGGTCAGCTAGCTTACATGGTTCTGTCTGGTAACAAACTCGATGGTGTCATTCCAAGAACCATATGTTCCAATGCAACAAGTTTGGAACACTTGATGCTATCAGGAAGTGGACTTCANGGTGAGATCCCAGCTGAGCTGAGTCAGTGCCAANCACTGAAACAACTTGATTTGTCTAACAATTCACTCAATGGATCCATACCTCTTGAGCTTTATGGGTTGCTGGGGTTAACTGATATCTTGCTCAACAACAACAGTTTGGTTGGTTCCATCTCTCCCTTCATAGGGAACCTCAGTAGCTTGAAGACACTTTCTTTGTTTCACAACAATTTGCAGGGTGCTCTGCCCAGAGAGATTGGAATGCTTGGCAAGTTGGAAATTTTATTTCTTTATGAGAATCAATTATCCGGGGTTATACCTATGGAGATTGGTAACTGTTCAAGCTTGCAAATGATTGATTTCTTTGGAAATCGTTTCAGTGGGGAAATTCCCATCACTATTGGAAGGTTGAAAGAGTTAAAGTTCCTTCACCTTAGGCAAAATGAGCTTGTGGGTGAAATTCCTGCCACCTTGGGTAACTGTCATAATCTGAACATCCTGGCTTTGCCTGACAATCAACTCTCTGGTGCAATTCCTGCAACATTTGGATTCCTGAAGTCATTGCAACAGTTCATGCTCTACAACAATTCTCTTGAAGGTAACCTCCCTCACCAACTGATAAATTTAGCAAACTTGACCAGAGTGAATCTTTCAAACAACAAATTGAATGGTAGTATAGCTGCACTGTGTAGCTCCCGATCGTTTCTTTCTTTCGATGTTACCAACAATGAGTTTGACGGCGAGATTCCGCCTCAACTGGGAAACTCACCCTCCCTTCAGAGGCTAAGATTAGGTAGCAACAAATTTTCTGGTGAAATTCCAAGGACATTGGGAAAAATCCATGAGCTATCATTGTTAGACCTCTCAGGAAATTCACTCACTGGACCGATACCAGCTGAGCTTACTCTGTGCAATAAACTGGCTTATATTGATTTACACAGTAATCTTCTTTTTGGACAAGTGCCATCATGGCTTGGAAATTTGCCTCAGNTGGGAGAGCTTAAGCTCTCCTCCAATAATTTTTCTGGACCTCTTCCATTAGGCCTATTCAAATGTTCCAAATTACTAGTTCTCTCTCTAAATGATAACTCACTCAATGGAAGTCTCCCAGCTGATATTGGTGATCTTGCAAATCTTAATGTCCTCAGACTTGACCGTAATAGGTTCTCTGAACCAATCCCTCCGGAGATAGGTAAGTTGAGCAAGCTTTATGAGTTCCAGCTCTCCAGGAATAGCTTTAATGGTGAGATGCCAATTGAGATTGGAAAACTTCAAAATCTCCAAATCATTTTAGACCTCAGTTACAATAATCTCTCAGGTCACATCCCACCTTCTCTTGGGACGCTGTCAAAACTAGAAGCACTCGATCTTTCCAACAATCAACTTACTGGAAAAATCCCTCCACAAGTTGGTGAAATGAGCAGCTTGGGAAAGCTTGATCTCTCTTACAACAACCTTCAAGGAAAATTGGACAAGGGGTTCTCCCGCTGGCCAGATGAGGCATTTGAAGGAAACCCACATCTTTGTGGAAGCAGTCTTGATCGCTGCGACAGGGATGGTACTTCTGGTGGTGAGCAGCCAGGCCTAAGTGAGTCATCAGTAGTGATAATATCTGTCTTTTCAACTTTAGCTGCAATTGCTCTATTGATACTTTCAGTGAGAATCTTCAGCAAAAACAAGCAAGAATTTTTAAGGAAAGACAGTGAAGTGACTTATGTCTACTCTTCCTCTTCATCACAAGCACAGAGACGGCCNCTGTTCCAACTAAATGCTGCTGGAAAGAGAGATTTCAGGTGGGAAGATATCATGAATGCCACAAACAATCTAAATGATGACTTCATGATTGGTTCAGGAGGTTCAGGGAAAATCTACAAGGCTGAATTGGCCACTGGAGAGACGGTTGCTGTAAAGAAGATTTCAACAAAAGATGATTTTCTGTTAAACAGAAGCTTTGTAAGAGAAGTGAAGACACTGGGGAGGATAAGGCACAGACATCTGGTGAAGCTAATAGGGTTTTGTAGCAATAGAAATAAAGGAGCAGATTGGAATCTGTTGATATATGAGTACATGGAGAATGGAAGCTTATGGGATTGGCTTCATGGGAAACCGGCCAATGCGGGCAAAGTAAAGAAAAGTCTTGATTGGGAGACAAGGTTCAAAATTGCTGTGGGATTAGCTCAAGGAGTGGAGTACCTACATCATGATTGTGTGCCAATGATCATCCACAGGGACATCAAATCCAGCAACCTGTTGCTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTGGCAAAAGCACTCATTGAGAATTATGACTCCAATACTGAGTCTAATTCTTGGTTTGCAGGGTCTTACGGCTACATAGCCCCAGAGTATGCATTCTCCCTAAAGGCAACAGAAAAAAGTGATGTTTACAGCATGGGAATTGTTCTCATGGAACTTGTTAGTGGTAAAATGCCAACAAATGACATTTTTGGAGCAGAGATGGACATGGTGAGATGGGTGGAGATGCACATTGATATGCATGGCTCTGCCCGTGAAAAACTGATAGATCCTGAACTGAAACCTCTNGTACCTGGTGAAGAGTTTGCTGCATTCCAAGTGCTTGAGATAGCCTTGCAGTGCACGAAAACTACACCACAAGAGAGACCATCTTCAAGGAAAGCATGCGATCTGCTCCTCCATGTATTCAATAAGAGAATGATGGACTTTGACAAGATGAATTTGGATCATTACAAGTGA

Protein Sequence

>Glyur000234s00015068.1
MRISTLAVVILLVCFSSMPLVLGQGNFNETTLRVLLEVKKSFVQDPQNVLSGWSEDNTNYCSWRGVSCGLNSLDDNSVHVVGLNLSDSSLTGSISPSLGHLQNLLHLDLSSNSLTGLIPPNLSNLVSLESLLLFSNQLTGPVPTELGSLTSLRVMRLGDNELTGMIPTSLGNLFNLVNLGLASCQLTGSIPPELGQLSLMENLILQDNELMGPIPSELGNCSSLVIFTATNNKLNGSIPSELGQLKNAQILNLANNSLSGEIPSQLGEMSELIYLNLMGNQLEGAIPLSLAQLGNLQNLDLSMNKLSGGIPEELGNMGQLAYMVLSGNKLDGVIPRTICSNATSLEHLMLSGSGLXGEIPAELSQCQXLKQLDLSNNSLNGSIPLELYGLLGLTDILLNNNSLVGSISPFIGNLSSLKTLSLFHNNLQGALPREIGMLGKLEILFLYENQLSGVIPMEIGNCSSLQMIDFFGNRFSGEIPITIGRLKELKFLHLRQNELVGEIPATLGNCHNLNILALPDNQLSGAIPATFGFLKSLQQFMLYNNSLEGNLPHQLINLANLTRVNLSNNKLNGSIAALCSSRSFLSFDVTNNEFDGEIPPQLGNSPSLQRLRLGSNKFSGEIPRTLGKIHELSLLDLSGNSLTGPIPAELTLCNKLAYIDLHSNLLFGQVPSWLGNLPQXGELKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSLNGSLPADIGDLANLNVLRLDRNRFSEPIPPEIGKLSKLYEFQLSRNSFNGEMPIEIGKLQNLQIILDLSYNNLSGHIPPSLGTLSKLEALDLSNNQLTGKIPPQVGEMSSLGKLDLSYNNLQGKLDKGFSRWPDEAFEGNPHLCGSSLDRCDRDGTSGGEQPGLSESSVVIISVFSTLAAIALLILSVRIFSKNKQEFLRKDSEVTYVYSSSSSQAQRRPLFQLNAAGKRDFRWEDIMNATNNLNDDFMIGSGGSGKIYKAELATGETVAVKKISTKDDFLLNRSFVREVKTLGRIRHRHLVKLIGFCSNRNKGADWNLLIYEYMENGSLWDWLHGKPANAGKVKKSLDWETRFKIAVGLAQGVEYLHHDCVPMIIHRDIKSSNLLLDSKMEAHLGDFGLAKALIENYDSNTESNSWFAGSYGYIAPEYAFSLKATEKSDVYSMGIVLMELVSGKMPTNDIFGAEMDMVRWVEMHIDMHGSAREKLIDPELKPLVPGEEFAAFQVLEIALQCTKTTPQERPSSRKACDLLLHVFNKRMMDFDKMNLDHYK

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00234	45736	49631	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000234s00015068.1	PF08263.7	LRRNT_2	33	68	1.50E-10
Glyur000234s00015068.1	PF00560.28	LRR_1	103	125	0.18
Glyur000234s00015068.1	PF13516.1	LRR_6	294	315	0.35
Glyur000234s00015068.1	PF13855.1	LRR_8	320	379	2.60E-06
Glyur000234s00015068.1	PF13855.1	LRR_8	780	835	5.70E-07
Glyur000234s00015068.1	PF00069.20	Pkinase	964	1241	2.60E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.392
SRR1783600	control	0.374
SRR1783602	moderate drought stress	0.660
SRR1811619	moderate drought stress	0.655

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.343
DRR006520	Root Summer glycyrrhizin high producing strain	0.368
DRR006521	Root Winter glycyrrhizin high producing strain	0.147
DRR006522	Root Winter glycyrrhizin high producing strain	0.143
DRR006523	Root Summer glycyrrhizin low producing strain	0.320
DRR006524	Root Summer glycyrrhizin low producing strain	0.319
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.882
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.846

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	10.524
SRR2868004	Drought Stress(Tissue:root)	15.004
SRR2967015	Control (Tissue:root)	16.725

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.774
SRR9715740	Leave	0.979
SRR9715741	Leave	0.746
SRR9715739	Root	0.669
SRR9715742	Root	0.711
SRR9715743	Root	0.831

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.773
SRR8749028	MeJA induced 9h	0.923
SRR8749029	MeJA induced 9h	0.287
SRR8749030	Uninduced	0.186
SRR8749031	Uninduced	0.080
SRR8749032	Uninduced	0.055

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.143
SRR8400027	Control-Root	2.538