Gene detail information of Glyur000234s00015082.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02160.1 | 3.00E-78 | CCCH-type zinc finger family protein |
| NR | XP_004504622.1 | 0 | PREDICTED: zinc finger CCCH domain-containing protein 17-like [Cicer arietinum] |
| Swissprot | tr|Q9ZUM0|C3H17_ARATH | 3.00E-108 | Zinc finger CCCH domain-containing protein 17 |
| trEMBL | tr|I1K3A1|I1K3A1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G26620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00234 | 122531 | 126180 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000234s00015082.1 | PF00642.19 | zf-CCCH | 124 | 146 | 8.90E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.702 |
| SRR1783600 | control | 41.861 |
| SRR1783602 | moderate drought stress | 37.641 |
| SRR1811619 | moderate drought stress | 37.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.222 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.962 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 35.080 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.830 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.739 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 34.087 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.358 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 50.756 |
| SRR2868004 | Drought Stress(Tissue:root) | 50.516 |
| SRR2967015 | Control (Tissue:root) | 50.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 26.886 |
| SRR9715740 | Leave | 32.445 |
| SRR9715741 | Leave | 36.845 |
| SRR9715739 | Root | 12.726 |
| SRR9715742 | Root | 31.096 |
| SRR9715743 | Root | 29.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 59.899 |
| SRR8749028 | MeJA induced 9h | 58.515 |
| SRR8749029 | MeJA induced 9h | 67.791 |
| SRR8749030 | Uninduced | 43.139 |
| SRR8749031 | Uninduced | 87.551 |
| SRR8749032 | Uninduced | 58.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 32.711 |
| SRR8400027 | Control-Root | 32.121 |