Gene detail information of Glyur000234s00015088.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G17330.10glutamate decarboxylase
NRXP_003531123.10PREDICTED: glutamate decarboxylase 1-like [Glycine max]
COGYP_004290634.17.00E-166glutamate decarboxylase [Methanobacterium sp. AL-21]
Swissprottr|Q42521|DCE1_ARATH0Glutamate decarboxylase 1
trEMBLtr|I1KRN4|I1KRN4_SOYBN0Glutamate decarboxylase {ECO:0000256|RuleBase:RU361171}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00234148511151543-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01580E4.1.1.15, gadB, gadA, GAD EC:4.1.1.15 Butanoate metabolism map00650
Alanine, aspartate and glutamate metabolismmap00250
beta-Alanine metabolismmap00410
Taurine and hypotaurine metabolismmap00430
Quorum sensingmap02024
GABAergic synapsemap04727
Type I diabetes mellitusmap04940


Gene Ontology

biological_process

GO:0006536  glutamate metabolic process

GO:0019752  carboxylic acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004351  glutamate decarboxylase activity

GO:0016831  carboxy-lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000234s00015088.1PF00282.14Pyridoxal_deC333815.90E-93


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.373
SRR1783600control0.377
SRR1783602moderate drought stress0.582
SRR1811619moderate drought stress0.575

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.091
DRR006520Root Summer glycyrrhizin high producing strain3.113
DRR006521Root Winter glycyrrhizin high producing strain4.641
DRR006522Root Winter glycyrrhizin high producing strain4.536
DRR006523Root Summer glycyrrhizin low producing strain8.833
DRR006524Root Summer glycyrrhizin low producing strain8.737
DRR006525Leaf Summer glycyrrhizin high producing strain0.401
DRR006526Leaf Summer glycyrrhizin high producing strain0.400

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.266
SRR2868004Drought Stress(Tissue:root)3.339
SRR2967015Control (Tissue:root)2.168

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.356
SRR9715740Leave0.585
SRR9715741Leave1.745
SRR9715739Root1.141
SRR9715742Root1.440
SRR9715743Root1.631

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h62.576
SRR8749028MeJA induced 9h30.993
SRR8749029MeJA induced 9h149.766
SRR8749030Uninduced36.425
SRR8749031Uninduced104.972
SRR8749032Uninduced81.089

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.451
SRR8400027Control-Root9.671

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved